OpenMS
2.4.0
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#include <OpenMS/KERNEL/ConversionHelper.h>
Static Public Member Functions | |
static void | convert (UInt64 const input_map_index, PeakMap &input_map, ConsensusMap &output_map, Size n=-1) |
Similar to convert for FeatureMaps. More... | |
static void | convert (ConsensusMap const &input_map, const bool keep_uids, FeatureMap &output_map) |
Convert a ConsensusMap to a FeatureMap (of any feature type). More... | |
static void | convert (UInt64 const input_map_index, FeatureMap const &input_map, ConsensusMap &output_map, Size n=-1) |
Convert a FeatureMap (of any feature type) to a ConsensusMap. More... | |
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static |
Similar to convert
for FeatureMaps.
Only the n
most intense elements are copied.
Currently PeakMap does not have a unique id but ConsensusMap has one, so we assign a new one here.
input_map_index | The index of the input map. |
input_map | The input map to be converted. |
output_map | The resulting ConsensusMap. |
n | The maximum number of elements to be copied. |
Referenced by FeatureGroupingAlgorithmUnlabeled::setReference(), and MapAlignmentAlgorithmPoseClustering::setReference().
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static |
Convert a ConsensusMap to a FeatureMap (of any feature type).
The previous content of output_map is cleared. UID's of the elements and the container is copied if the keep_uids
flag is set.
input_map | The container to be converted. |
keep_uids | Shall the UID's of the elements and the container be kept or created anew |
output_map | The resulting ConsensusMap. |
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static |
Convert a FeatureMap (of any feature type) to a ConsensusMap.
Each ConsensusFeature contains a map index, so this has to be given as well. The previous content of output_map
is cleared. An arguable design decision is that the unique id of the FeatureMap is copied (!) to the ConsensusMap, because that is the way it is meant to be used in the algorithms.
Only the first (!) n
elements are copied. (This parameter exists mainly for compatibility with convert
for MSExperiments. To use it in a meaningful way, apply one of the sorting methods to input_map
beforehand.)
input_map_index | The index of the input map. |
input_map | The container to be converted. |
output_map | The resulting ConsensusMap. |
n | The maximum number of elements to be copied. |