RichPeak2D Class Reference

A 2-dimensional raw data point or peak with meta information. More...

#include <OpenMS/KERNEL/RichPeak2D.h>

Inheritance diagram for RichPeak2D:

Public Member Functions
	RichPeak2D ()
	Default constructor. More...
	RichPeak2D (const RichPeak2D &p)
	Copy constructor. More...
	RichPeak2D (const Peak2D &p)
	Constructor from Peak2D. More...
	RichPeak2D (const PositionType &pos, const IntensityType in)
	Member constructor. More...
	~RichPeak2D () override
	Destructor. More...
RichPeak2D &	operator= (const RichPeak2D &rhs)
	Assignment operator. More...
RichPeak2D &	operator= (const Peak2D &rhs)
	Assignment operator. More...
bool	operator== (const RichPeak2D &rhs) const
	Equality operator. More...
bool	operator!= (const RichPeak2D &rhs) const
	Equality operator. More...
Public Member Functions inherited from Peak2D
Peak2D &	operator= (const Peak2D &rhs)
	Assignment operator. More...
bool	operator== (const Peak2D &rhs) const
	Equality operator. More...
bool	operator!= (const Peak2D &rhs) const
	Equality operator. More...
	Peak2D ()
	Peak2D (const PositionType &pos, const IntensityType in)
	Member constructor. More...
	Peak2D (const Peak2D &p)
	Copy constructor. More...
	~Peak2D ()
	Destructor. More...
IntensityType	getIntensity () const
void	setIntensity (IntensityType intensity)
	Non-mutable access to the data point intensity (height) More...
PositionType const &	getPosition () const
	Non-mutable access to the position. More...
PositionType &	getPosition ()
	Mutable access to the position. More...
void	setPosition (const PositionType &position)
	Mutable access to the position. More...
CoordinateType	getMZ () const
	Returns the m/z coordinate (index 1) More...
void	setMZ (CoordinateType coordinate)
	Mutable access to the m/z coordinate (index 1) More...
CoordinateType	getRT () const
	Returns the RT coordinate (index 0) More...
void	setRT (CoordinateType coordinate)
	Mutable access to the RT coordinate (index 0) More...
Public Member Functions inherited from MetaInfoInterface
	MetaInfoInterface ()
	Constructor. More...
	MetaInfoInterface (const MetaInfoInterface &rhs)
	Copy constructor. More...
	~MetaInfoInterface ()
	Destructor. More...
MetaInfoInterface &	operator= (const MetaInfoInterface &rhs)
	Assignment operator. More...
bool	operator== (const MetaInfoInterface &rhs) const
	Equality operator. More...
bool	operator!= (const MetaInfoInterface &rhs) const
	Equality operator. More...
const DataValue &	getMetaValue (const String &name) const
	Returns the value corresponding to a string (or DataValue::EMPTY if not found) More...
const DataValue &	getMetaValue (UInt index) const
	Returns the value corresponding to an index (or DataValue::EMPTY if not found) More...
bool	metaValueExists (const String &name) const
	Returns whether an entry with the given name exists. More...
bool	metaValueExists (UInt index) const
	Returns whether an entry with the given index exists. More...
void	setMetaValue (const String &name, const DataValue &value)
	Sets the DataValue corresponding to a name. More...
void	setMetaValue (UInt index, const DataValue &value)
	Sets the DataValue corresponding to an index. More...
void	removeMetaValue (const String &name)
	Removes the DataValue corresponding to name if it exists. More...
void	removeMetaValue (UInt index)
	Removes the DataValue corresponding to index if it exists. More...
void	getKeys (std::vector< String > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...
void	getKeys (std::vector< UInt > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...
bool	isMetaEmpty () const
	Returns if the MetaInfo is empty. More...
void	clearMetaInfo ()
	Removes all meta values. More...
Public Member Functions inherited from UniqueIdInterface
	UniqueIdInterface ()
	Default constructor - the unique id will be invalid More...
	UniqueIdInterface (const UniqueIdInterface &rhs)
	Copy constructor - copies the unique id. More...
UniqueIdInterface &	operator= (UniqueIdInterface const &rhs)
	Assignment operator - copies the unique id. More...
virtual	~UniqueIdInterface ()
	Destructor. More...
bool	operator== (UniqueIdInterface const &rhs) const
	Equality comparison operator - the unique ids must be equal (!) More...
UInt64	getUniqueId () const
	Non-mutable access to unique id - returns the unique id. More...
Size	clearUniqueId ()
	Clear the unique id. The new unique id will be invalid. Returns 1 if the unique id was changed, 0 otherwise. More...
void	swap (UniqueIdInterface &from)
Size	hasValidUniqueId () const
	Returns whether the unique id is valid. Returns 1 if the unique id is valid, 0 otherwise. More...
Size	hasInvalidUniqueId () const
	Returns whether the unique id is invalid. Returns 1 if the unique id is invalid, 0 otherwise. More...
Size	setUniqueId ()
	Assigns a new, valid unique id. Always returns 1. More...
Size	ensureUniqueId ()
	Assigns a valid unique id, but only if the present one is invalid. Returns 1 if the unique id was changed, 0 otherwise. More...
void	setUniqueId (UInt64 rhs)
	Assigns the given unique id. More...
void	setUniqueId (const String &rhs)
	Mutable access to unique id. More...

Additional Inherited Members
Public Types inherited from Peak2D
typedef float	IntensityType
	Intensity type. More...
typedef double	CoordinateType
	Coordinate type (of the position) More...
typedef DPosition< 2 >	PositionType
	Position type. More...
enum	DimensionDescription { RT = 0, MZ = 1, DIMENSION = 2 }
	This enum maps the symbolic names of the dimensions to numbers. More...
Public Types inherited from UniqueIdInterface
enum	{ INVALID = 0 }
	This is the invalid unique id (cast it to a UInt64 if you like) More...
Static Public Member Functions inherited from Peak2D
static char const *	shortDimensionName (UInt const dim)
	Short name of the dimension (abbreviated form) More...
static char const *	shortDimensionNameRT ()
	Short name of the dimension (abbreviated form) More...
static char const *	shortDimensionNameMZ ()
	Short name of the dimension (abbreviated form) More...
static char const *	fullDimensionName (UInt const dim)
	Full name of the dimension (self-explanatory form) More...
static char const *	fullDimensionNameRT ()
	Full name of the dimension (self-explanatory form) More...
static char const *	fullDimensionNameMZ ()
	Full name of the dimension (self-explanatory form) More...
static char const *	shortDimensionUnit (UInt const dim)
	Unit of measurement (abbreviated form) More...
static char const *	shortDimensionUnitRT ()
	Unit of measurement (abbreviated form) More...
static char const *	shortDimensionUnitMZ ()
	Unit of measurement (abbreviated form) More...
static char const *	fullDimensionUnit (UInt const dim)
	Unit of measurement (self-explanatory form) More...
static char const *	fullDimensionUnitRT ()
	Unit of measurement (self-explanatory form) More...
static char const *	fullDimensionUnitMZ ()
	Unit of measurement (self-explanatory form) More...
Static Public Member Functions inherited from MetaInfoInterface
static MetaInfoRegistry &	metaRegistry ()
	Returns a reference to the MetaInfoRegistry. More...
Static Public Member Functions inherited from UniqueIdInterface
static bool	isValid (UInt64 unique_id)
	Returns true if the unique_id is valid, false otherwise. More...
Protected Member Functions inherited from MetaInfoInterface
void	createIfNotExists_ ()
	Creates the MetaInfo object if it does not exist. More...
Protected Attributes inherited from Peak2D
PositionType	position_
	The data point position. More...
IntensityType	intensity_
	The data point intensity. More...
Protected Attributes inherited from MetaInfoInterface
MetaInfo *	meta_
	Pointer to the MetaInfo object (0 by default) More...
Protected Attributes inherited from UniqueIdInterface
UInt64	unique_id_
	the unique id More...
Static Protected Attributes inherited from Peak2D
static char const *const	dimension_name_short_ [DIMENSION]
	Short name of the dimension (abbreviated form) More...
static char const *const	dimension_name_full_ [DIMENSION]
	Full name of the dimension (self-explanatory form) More...
static char const *const	dimension_unit_short_ [DIMENSION]
	Unit of measurement (abbreviated form) More...
static char const *const	dimension_unit_full_ [DIMENSION]
	Unit of measurement (self-explanatory form) More...

Detailed Description

A 2-dimensional raw data point or peak with meta information.

This data structure is intended for continuous data or peak data. If you do not need to annotated single peaks with meta data, use Peak2D instead.

Constructor & Destructor Documentation

RichPeak2D() [1/4]

RichPeak2D ( )

inline

Default constructor.

RichPeak2D() [2/4]

RichPeak2D ( const RichPeak2D &  p )

inline

Copy constructor.

RichPeak2D() [3/4]

RichPeak2D ( const Peak2D &  p )

inlineexplicit

Constructor from Peak2D.

References UniqueIdInterface::clearUniqueId().

RichPeak2D() [4/4]

RichPeak2D ( const PositionType &  pos, const IntensityType  in  )

inlineexplicit

Member constructor.

~RichPeak2D()

~RichPeak2D ( )

inlineoverride

Destructor.

Member Function Documentation

operator!=()

bool operator!= ( const RichPeak2D &  rhs ) const

inline

Equality operator.

References KDTree::operator==().

operator=() [1/2]

RichPeak2D& operator= ( const RichPeak2D &  rhs )

inline

Assignment operator.

References MetaInfoInterface::operator=(), UniqueIdInterface::operator=(), and Peak2D::operator=().

operator=() [2/2]

RichPeak2D& operator= ( const Peak2D &  rhs )

inline

Assignment operator.

References UniqueIdInterface::clearUniqueId(), and Peak2D::operator=().

operator==()

bool operator== ( const RichPeak2D &  rhs ) const

inline

Equality operator.

References MetaInfoInterface::operator==(), UniqueIdInterface::operator==(), and Peak2D::operator==().