SvmTheoreticalSpectrumGeneratorSet Class Reference

Loads SvmTheoreticalSpectrumGenerator instances for different charges. More...

#include <OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.h>

Public Member Functions
SvmTheoreticalSpectrumGeneratorSet &	operator= (const SvmTheoreticalSpectrumGeneratorSet &tsg)
	Assignment operator. More...
void	simulate (PeakSpectrum &spectrum, const AASequence &peptide, boost::random::mt19937_64 &rng, Size precursor_charge)
	Generate the MS/MS according to the model for the given precursor_charge. More...
void	load (String)
	Load a trained Svm and Prob. models. More...
void	getSupportedCharges (std::set< Size > &charges)
	Return precursor charges for which a model is contained in the set. More...
SvmTheoreticalSpectrumGenerator &	getSvmModel (Size)
	return a modifiable reference to the SVM model with given charge. If charge is not supported throw exception More...
Constructors and Destructors
	SvmTheoreticalSpectrumGeneratorSet ()
	Default constructor. More...
	SvmTheoreticalSpectrumGeneratorSet (const SvmTheoreticalSpectrumGeneratorSet &source)
	Copy constructor. More...
virtual	~SvmTheoreticalSpectrumGeneratorSet ()
	Destructor. More...

Protected Attributes
std::map< Size, SvmTheoreticalSpectrumGenerator >	simulators_

Detailed Description

Loads SvmTheoreticalSpectrumGenerator instances for different charges.

The input file contains pairs of charge and svm models separated by a ":" (see share/OpenMS/examples/simulation/SvmModelSet.model)

Actually only a test model is shipped with OpenMS.
Please find trained models at: http://sourceforge.net/projects/open-ms/files/Supplementary/Simulation/.

Constructor & Destructor Documentation

SvmTheoreticalSpectrumGeneratorSet() [1/2]

SvmTheoreticalSpectrumGeneratorSet

(

)

Default constructor.

SvmTheoreticalSpectrumGeneratorSet() [2/2]

SvmTheoreticalSpectrumGeneratorSet

(

const SvmTheoreticalSpectrumGeneratorSet &

source

)

Copy constructor.

~SvmTheoreticalSpectrumGeneratorSet()

virtual ~SvmTheoreticalSpectrumGeneratorSet ( )

virtual

Destructor.

Member Function Documentation

getSupportedCharges()

void getSupportedCharges

(

std::set< Size > &

charges

)

Return precursor charges for which a model is contained in the set.

getSvmModel()

SvmTheoreticalSpectrumGenerator& getSvmModel

(

Size

)

return a modifiable reference to the SVM model with given charge. If charge is not supported throw exception

load()

void load

(

String

)

Load a trained Svm and Prob. models.

operator=()

SvmTheoreticalSpectrumGeneratorSet& operator=

(

const SvmTheoreticalSpectrumGeneratorSet &

tsg

)

Assignment operator.

simulate()

void simulate	(	PeakSpectrum &	spectrum,
		const AASequence &	peptide,
		boost::random::mt19937_64 &	rng,
		Size	precursor_charge
	)

Generate the MS/MS according to the model for the given precursor_charge.

Member Data Documentation

simulators_

std::map<Size, SvmTheoreticalSpectrumGenerator> simulators_

protected