OpenMS
2.5.0
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Base class for de novo identification. More...
#include <OpenMS/ANALYSIS/DENOVO/DeNovoIdentification.h>
Public Member Functions | |
Constructors and destructors | |
DeNovoIdentification () | |
default constructor More... | |
~DeNovoIdentification () override | |
destructor More... | |
DeNovoIdentification (const DeNovoIdentification &rhs) | |
copy constructor More... | |
DeNovoIdentification & | operator= (const DeNovoIdentification &rhs) |
assignment operator More... | |
virtual void | getIdentifications (std::vector< PeptideIdentification > &ids, const PeakMap &exp)=0 |
performs an ProteinIdentification run on a PeakMap More... | |
virtual void | getIdentification (PeptideIdentification &id, const PeakSpectrum &spectrum)=0 |
performs an ProteinIdentification run on a PeakSpectrum More... | |
Public Member Functions inherited from DefaultParamHandler | |
DefaultParamHandler (const String &name) | |
Constructor with name that is displayed in error messages. More... | |
DefaultParamHandler (const DefaultParamHandler &rhs) | |
Copy constructor. More... | |
virtual | ~DefaultParamHandler () |
Destructor. More... | |
virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) |
Assignment operator. More... | |
virtual bool | operator== (const DefaultParamHandler &rhs) const |
Equality operator. More... | |
void | setParameters (const Param ¶m) |
Sets the parameters. More... | |
const Param & | getParameters () const |
Non-mutable access to the parameters. More... | |
const Param & | getDefaults () const |
Non-mutable access to the default parameters. More... | |
const String & | getName () const |
Non-mutable access to the name. More... | |
void | setName (const String &name) |
Mutable access to the name. More... | |
const std::vector< String > & | getSubsections () const |
Non-mutable access to the registered subsections. More... | |
Additional Inherited Members | |
Protected Member Functions inherited from DefaultParamHandler | |
virtual void | updateMembers_ () |
This method is used to update extra member variables at the end of the setParameters() method. More... | |
void | defaultsToParam_ () |
Updates the parameters after the defaults have been set in the constructor. More... | |
Protected Attributes inherited from DefaultParamHandler | |
Param | param_ |
Container for current parameters. More... | |
Param | defaults_ |
Container for default parameters. This member should be filled in the constructor of derived classes! More... | |
std::vector< String > | subsections_ |
Container for registered subsections. This member should be filled in the constructor of derived classes! More... | |
String | error_name_ |
Name that is displayed in error messages during the parameter checking. More... | |
bool | check_defaults_ |
If this member is set to false no checking if parameters in done;. More... | |
bool | warn_empty_defaults_ |
If this member is set to false no warning is emitted when defaults are empty;. More... | |
Base class for de novo identification.
default constructor
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override |
destructor
DeNovoIdentification | ( | const DeNovoIdentification & | rhs | ) |
copy constructor
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pure virtual |
performs an ProteinIdentification run on a PeakSpectrum
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pure virtual |
performs an ProteinIdentification run on a PeakMap
DeNovoIdentification& operator= | ( | const DeNovoIdentification & | rhs | ) |
assignment operator