OpenMS  2.5.0
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HMMState Class Reference

Hidden Markov Model State class for the Hidden Markov Model. More...

#include <OpenMS/ANALYSIS/ID/HiddenMarkovModel.h>

Constructors and destructors

bool hidden_
 
String name_
 
std::set< HMMState * > pre_states_
 
std::set< HMMState * > succ_states_
 
 HMMState ()
 default constructor More...
 
 HMMState (const HMMState &state)
 copy constructor More...
 
 HMMState (const String &name, bool hidden=true)
 constructor with name and visibility option More...
 
virtual ~HMMState ()
 destructor More...
 
HMMStateoperator= (const HMMState &)
 
void setName (const String &name)
 sets the name of the state More...
 
const StringgetName () const
 returns the name of the state More...
 
void setHidden (bool hidden)
 sets the hidden property to the state More...
 
bool isHidden () const
 returns true if the state is hidden More...
 
void addPredecessorState (HMMState *state)
 adds the given predecessor state to the list More...
 
void deletePredecessorState (HMMState *state)
 deletes the given predecessor state from the list More...
 
void addSuccessorState (HMMState *state)
 add the given successor state to the list More...
 
void deleteSuccessorState (HMMState *state)
 deletes the given successor state from the list More...
 
const std::set< HMMState * > & getPredecessorStates () const
 returns the predecessor states of the state More...
 
const std::set< HMMState * > & getSuccessorStates () const
 return the successor states of the state More...
 

Detailed Description

Hidden Markov Model State class for the Hidden Markov Model.

Constructor & Destructor Documentation

◆ HMMState() [1/3]

HMMState ( )

default constructor

◆ HMMState() [2/3]

HMMState ( const HMMState state)

copy constructor

◆ HMMState() [3/3]

HMMState ( const String name,
bool  hidden = true 
)

constructor with name and visibility option

◆ ~HMMState()

virtual ~HMMState ( )
virtual

destructor

Member Function Documentation

◆ addPredecessorState()

void addPredecessorState ( HMMState state)

adds the given predecessor state to the list

◆ addSuccessorState()

void addSuccessorState ( HMMState state)

add the given successor state to the list

◆ deletePredecessorState()

void deletePredecessorState ( HMMState state)

deletes the given predecessor state from the list

◆ deleteSuccessorState()

void deleteSuccessorState ( HMMState state)

deletes the given successor state from the list

◆ getName()

const String& getName ( ) const

returns the name of the state

◆ getPredecessorStates()

const std::set<HMMState *>& getPredecessorStates ( ) const

returns the predecessor states of the state

◆ getSuccessorStates()

const std::set<HMMState *>& getSuccessorStates ( ) const

return the successor states of the state

◆ isHidden()

bool isHidden ( ) const

returns true if the state is hidden

◆ operator=()

HMMState& operator= ( const HMMState )

◆ setHidden()

void setHidden ( bool  hidden)

sets the hidden property to the state

◆ setName()

void setName ( const String name)

sets the name of the state

Accessors

Member Data Documentation

◆ hidden_

bool hidden_
protected

◆ name_

String name_
protected

◆ pre_states_

std::set<HMMState *> pre_states_
protected

◆ succ_states_

std::set<HMMState *> succ_states_
protected