RNPxlFragmentAnnotationHelper Class Reference

Convenience functions to construct appealing fragment annotation strings and store them as PeptideHit::PeakAnnotation. More...

#include <OpenMS/ANALYSIS/RNPXL/RNPxlFragmentAnnotationHelper.h>

Classes
struct	FragmentAnnotationDetail_
	Single fragment annotation. More...

Static Public Member Functions
static String	getAnnotatedImmoniumIon (char c, const String &fragment_shift_name)
static std::vector< PeptideHit::PeakAnnotation >	fragmentAnnotationDetailsToPHFA (const String &ion_type, std::map< Size, std::vector< FragmentAnnotationDetail_ > > ion_annotation_details)
	conversion of RNPxl annotations to PeptideHit::PeakAnnotation More...
static std::vector< PeptideHit::PeakAnnotation >	shiftedToPHFA (const std::map< String, std::set< std::pair< String, double > > > &shifted_ions)
static String	shiftedIonsToString (const std::vector< PeptideHit::PeakAnnotation > &as)
static void	addShiftedPeakFragmentAnnotation_ (const std::map< Size, std::vector< FragmentAnnotationDetail_ >> &shifted_b_ions, const std::map< Size, std::vector< FragmentAnnotationDetail_ >> &shifted_y_ions, const std::map< Size, std::vector< FragmentAnnotationDetail_ >> &shifted_a_ions, const std::vector< PeptideHit::PeakAnnotation > &shifted_immonium_ions, const std::vector< PeptideHit::PeakAnnotation > &annotated_marker_ions, const std::vector< PeptideHit::PeakAnnotation > &annotated_precursor_ions, std::vector< PeptideHit::PeakAnnotation > &fas)

Detailed Description

Convenience functions to construct appealing fragment annotation strings and store them as PeptideHit::PeakAnnotation.

Member Function Documentation

addShiftedPeakFragmentAnnotation_()

static void addShiftedPeakFragmentAnnotation_ ( const std::map< Size, std::vector< FragmentAnnotationDetail_ >> &  shifted_b_ions, const std::map< Size, std::vector< FragmentAnnotationDetail_ >> &  shifted_y_ions, const std::map< Size, std::vector< FragmentAnnotationDetail_ >> &  shifted_a_ions, const std::vector< PeptideHit::PeakAnnotation > &  shifted_immonium_ions, const std::vector< PeptideHit::PeakAnnotation > &  annotated_marker_ions, const std::vector< PeptideHit::PeakAnnotation > &  annotated_precursor_ions, std::vector< PeptideHit::PeakAnnotation > &  fas  )

static

fragmentAnnotationDetailsToPHFA()

static std::vector<PeptideHit::PeakAnnotation> fragmentAnnotationDetailsToPHFA ( const String &  ion_type, std::map< Size, std::vector< FragmentAnnotationDetail_ > >  ion_annotation_details  )

static

conversion of RNPxl annotations to PeptideHit::PeakAnnotation

getAnnotatedImmoniumIon()

static String getAnnotatedImmoniumIon ( char  c, const String &  fragment_shift_name  )

static

shiftedIonsToString()

static String shiftedIonsToString ( const std::vector< PeptideHit::PeakAnnotation > &  as )

static

shiftedToPHFA()

static std::vector<PeptideHit::PeakAnnotation> shiftedToPHFA ( const std::map< String, std::set< std::pair< String, double > > > &  shifted_ions )

static