MS2Info Class Reference

#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2Info.h>

Public Member Functions
	~MS2Info ()
	MS2Info ()
	MS2Info (int)
	MS2Info (std::string, std::string, float)
	MS2Info (std::string, std::string, int, float)
	MS2Info (std::string, std::string, float, int, int)
	MS2Info (const MS2Info &)
	MS2Info (const MS2Info *)
MS2Info &	operator= (const MS2Info &)
bool	operator== (const MS2Info &)
MS2Info &	operator<= (const MS2Info &)
MS2Info &	operator>= (const MS2Info &)
MS2Info &	operator< (const MS2Info &)
MS2Info &	operator> (const MS2Info &)
void	add_modification (int, double)
std::map< int, double >::iterator	get_Modification_list_start ()
std::map< int, double >::iterator	get_Modification_list_end ()
std::map< int, double >::iterator	find_Modification (int pos)
std::map< int, double > *	get_Modification_list ()
bool	check_MODIFICATION ()
void	set_THEO_MASS_from_SQ ()
double	get_THEO_MZ ()
void	set_FULL_SQ ()
void	set_SQ (std::string in)
void	show_info ()
bool	get_PROTEO_TYPE ()
int	get_TRYPTIC_STATE ()
bool	compare_AC (std::string)
bool	search_AC_pattern (std::string)
std::string	get_SQ ()
std::string	get_MOD_SQ ()
std::string	get_TOTAL_SQ ()
std::string	get_AC ()
std::vector< std::string >	get_ALL_AC ()
std::vector< std::string >::iterator	get_ALL_AC_START ()
std::vector< std::string >::iterator	get_ALL_AC_END ()
bool	find_AC (std::string)
void	set_AC (std::string)
float	get_PEP_PROB ()
void	set_PEP_PROB (float in)
double	get_MONO_MZ ()
void	set_MONO_MZ (double)
double	get_NEUTRAL_MR ()
void	set_NEUTRAL_MR (double)
int	get_CHRG ()
void	set_CHRG (int in)
int	get_SCAN ()
int	get_SCAN_START ()
void	set_SCAN_START (int in)
int	get_SCAN_END ()
void	set_SCAN_END (int in)
int	get_ID ()
double	get_DELTA_CN ()
void	set_DELTA_CN (double in)
double	get_XCORR ()
void	set_XCORR (double in)
void	set_MS2_TYPE_TAG (std::string in)
std::string	get_MS2_TYPE_TAG ()
double	getRetentionTime ()
void	setRetentionTime (double in)
double	get_MONO_AA_MASS (int)
std::string	get_PREV_AA ()
void	set_PREV_AA (std::string in)

Static Public Attributes
static const double	mono_mass [26]
static const char	AA [20]

Private Attributes
int	ID
std::string	SQ
std::string	FULL_SQ
std::string	PREV_AA
std::vector< std::string >	AC
std::string	MS2_TYPE_TAG
float	PEP_PROB
double	XCORR
double	DELTA_CN
double	MONO_MZ
double	THEO_MZ
double	NEUTRAL_MR
int	CHRG
int	SCAN_START
int	SCAN_END
double	TR
std::map< int, double >	MOD_LIST

Static Private Attributes
static const double	_MONO_H
static const double	_MONO_O

Constructor & Destructor Documentation

~MS2Info()

~MS2Info

(

)

MS2Info() [1/7]

MS2Info

(

)

MS2Info() [2/7]

MS2Info

(

int

)

MS2Info() [3/7]

MS2Info	(	std::string	,
		std::string	,
		float
	)

MS2Info() [4/7]

MS2Info	(	std::string	,
		std::string	,
		int	,
		float
	)

MS2Info() [5/7]

MS2Info	(	std::string	,
		std::string	,
		float	,
		int	,
		int
	)

MS2Info() [6/7]

MS2Info

(

const MS2Info &

)

MS2Info() [7/7]

MS2Info

(

const MS2Info *

)

Member Function Documentation

add_modification()

void add_modification	(	int	,
		double
	)

check_MODIFICATION()

bool check_MODIFICATION

(

)

compare_AC()

bool compare_AC

(

std::string

)

find_AC()

bool find_AC

(

std::string

)

find_Modification()

std::map<int, double>::iterator find_Modification

(

int

pos

)

get_AC()

std::string get_AC

(

)

get_ALL_AC()

std::vector<std::string> get_ALL_AC

(

)

get_ALL_AC_END()

std::vector<std::string>::iterator get_ALL_AC_END

(

)

get_ALL_AC_START()

std::vector<std::string>::iterator get_ALL_AC_START

(

)

get_CHRG()

int get_CHRG

(

)

get_DELTA_CN()

double get_DELTA_CN

(

)

get_ID()

int get_ID

(

)

get_MOD_SQ()

std::string get_MOD_SQ

(

)

get_Modification_list()

std::map<int, double>* get_Modification_list

(

)

get_Modification_list_end()

std::map<int, double>::iterator get_Modification_list_end

(

)

get_Modification_list_start()

std::map<int, double>::iterator get_Modification_list_start

(

)

get_MONO_AA_MASS()

double get_MONO_AA_MASS

(

int

)

get_MONO_MZ()

double get_MONO_MZ

(

)

get_MS2_TYPE_TAG()

std::string get_MS2_TYPE_TAG

(

)

get_NEUTRAL_MR()

double get_NEUTRAL_MR

(

)

get_PEP_PROB()

float get_PEP_PROB

(

)

get_PREV_AA()

std::string get_PREV_AA

(

)

get_PROTEO_TYPE()

bool get_PROTEO_TYPE

(

)

get_SCAN()

int get_SCAN

(

)

get_SCAN_END()

int get_SCAN_END

(

)

get_SCAN_START()

int get_SCAN_START

(

)

get_SQ()

std::string get_SQ

(

)

get_THEO_MZ()

double get_THEO_MZ

(

)

get_TOTAL_SQ()

std::string get_TOTAL_SQ

(

)

get_TRYPTIC_STATE()

int get_TRYPTIC_STATE

(

)

get_XCORR()

double get_XCORR

(

)

getRetentionTime()

double getRetentionTime

(

)

operator<()

MS2Info& operator<

(

const MS2Info &

)

operator<=()

MS2Info& operator<=

(

const MS2Info &

)

operator=()

MS2Info& operator=

(

const MS2Info &

)

operator==()

bool operator==

(

const MS2Info &

)

operator>()

MS2Info& operator>

(

const MS2Info &

)

operator>=()

MS2Info& operator>=

(

const MS2Info &

)

search_AC_pattern()

bool search_AC_pattern

(

std::string

)

set_AC()

void set_AC

(

std::string

)

set_CHRG()

void set_CHRG

(

int

in

)

set_DELTA_CN()

void set_DELTA_CN

(

double

in

)

set_FULL_SQ()

void set_FULL_SQ

(

)

set_MONO_MZ()

void set_MONO_MZ

(

double

)

set_MS2_TYPE_TAG()

void set_MS2_TYPE_TAG

(

std::string

in

)

set_NEUTRAL_MR()

void set_NEUTRAL_MR

(

double

)

set_PEP_PROB()

void set_PEP_PROB

(

float

in

)

set_PREV_AA()

void set_PREV_AA

(

std::string

in

)

set_SCAN_END()

void set_SCAN_END

(

int

in

)

set_SCAN_START()

void set_SCAN_START

(

int

in

)

set_SQ()

void set_SQ

(

std::string

in

)

set_THEO_MASS_from_SQ()

void set_THEO_MASS_from_SQ

(

)

set_XCORR()

void set_XCORR

(

double

in

)

setRetentionTime()

void setRetentionTime

(

double

in

)

show_info()

void show_info

(

)

Member Data Documentation

_MONO_H

const double _MONO_H

staticprivate

_MONO_O

const double _MONO_O

staticprivate

AA

const char AA[20]

static

AC

std::vector<std::string> AC

private

CHRG

int CHRG

private

DELTA_CN

double DELTA_CN

private

FULL_SQ

std::string FULL_SQ

private

ID

int ID

private

MOD_LIST

std::map<int, double> MOD_LIST

private

mono_mass

const double mono_mass[26]

static

MONO_MZ

double MONO_MZ

private

MS2_TYPE_TAG

std::string MS2_TYPE_TAG

private

NEUTRAL_MR

double NEUTRAL_MR

private

PEP_PROB

float PEP_PROB

private

PREV_AA

std::string PREV_AA

private

SCAN_END

int SCAN_END

private

SCAN_START

int SCAN_START

private

SQ

std::string SQ

private

THEO_MZ

double THEO_MZ

private

TR

double TR

private

XCORR

double XCORR

private