OpenMS
2.5.0
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Class that displays all meta information for PeptideIdentification objects. More...
#include <OpenMS/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.h>
Public Slots | |
void | store () override |
Public Slots inherited from BaseVisualizerGUI | |
virtual void | store ()=0 |
Saves the changes made in the GUI to the object. More... | |
Public Member Functions | |
PeptideIdentificationVisualizer (bool editable=false, QWidget *parent=nullptr, MetaDataBrowser *caller=nullptr) | |
Constructor. More... | |
void | load (PeptideIdentification &s, int tree_item_id) |
Loads the meta data from the object to the viewer. Gets the id of the item in the tree as parameter. More... | |
Public Member Functions inherited from BaseVisualizerGUI | |
BaseVisualizerGUI (bool editable=false, QWidget *parent=nullptr) | |
Constructor. More... | |
bool | isEditable () const |
Returns if the values are editable. More... | |
Public Member Functions inherited from BaseVisualizer< PeptideIdentification > | |
void | load (PeptideIdentification &o) |
Loads the object that is to be edited. More... | |
virtual | ~BaseVisualizer () |
Protected Slots | |
void | undo_ () |
Undo the changes made in the GUI. More... | |
void | updateTree_ () |
Updates the tree by calling MetaDataBrowser::updatePeptideHits(PeptideIdentification, int) More... | |
Protected Attributes | |
MetaDataBrowser * | pidv_caller_ |
Pointer to MetaDataBrowser. More... | |
int | tree_id_ |
The id of the item in the tree. More... | |
Edit fields and buttons | |
QLineEdit * | identifier_ |
QLineEdit * | score_type_ |
QComboBox * | higher_better_ |
QLineEdit * | identification_threshold_ |
QLineEdit * | filter_threshold_ |
Threshold for filtering by score. More... | |
Protected Attributes inherited from BaseVisualizerGUI | |
QPushButton * | undo_button_ |
Undo button. More... | |
QGridLayout * | mainlayout_ |
The main layout. More... | |
UInt | row_ |
Counter for the current grid row. More... | |
bool | editable_ |
Edit flag. More... | |
Protected Attributes inherited from BaseVisualizer< PeptideIdentification > | |
PeptideIdentification * | ptr_ |
Pointer to the object that is currently edited. More... | |
PeptideIdentification | temp_ |
Copy of current object used to restore the original values. More... | |
Additional Inherited Members | |
Signals inherited from BaseVisualizerGUI | |
void | sendStatus (std::string status) |
Sends a status message, if date is not in proper format. More... | |
Protected Member Functions inherited from BaseVisualizerGUI | |
void | addLabel_ (QString label) |
Adds a label to the grid layout. More... | |
void | addLabel_ (QString label, UInt row) |
Adds a label to a certain row. More... | |
void | addLineEdit_ (QLineEdit *&ptr, QString label) |
Adds a line edit field with label to the grid layout. More... | |
void | addIntLineEdit_ (QLineEdit *&ptr, QString label) |
Adds a line edit field to the grid layout including a int validator. More... | |
void | addDoubleLineEdit_ (QLineEdit *&ptr, QString label) |
Adds a line edit field to the grid layout including a double validator. More... | |
void | addLineEditButton_ (QString label, QLineEdit *&ptr1, QPushButton *&ptr2, QString buttonlabel) |
Adds a line edit field with label and button to the next free position in the grid. More... | |
void | addListView_ (QListWidget *&ptr, QString label) |
Adds a list edit field to the grid layout. More... | |
void | addTextEdit_ (QTextEdit *&ptr, QString label) |
Adds a text edit field to the grid layout. More... | |
void | addComboBox_ (QComboBox *&ptr, QString label) |
Adds a drop-down field to the grid layout. More... | |
void | addBooleanComboBox_ (QComboBox *&ptr, QString label) |
Adds a boolean drop-down field to the grid layout ( 'true'=1, 'false'=0 ). More... | |
void | fillComboBox_ (QComboBox *&ptr, const std::string *items, int item_count) |
Fills a combo box with string items (the number of strings is determined by item_count ). More... | |
void | addVSpacer_ () |
Adds vertical spacer. More... | |
void | addButton_ (QPushButton *&ptr, QString label) |
Adds a button to the next free position in the grid. More... | |
void | add2Buttons_ (QPushButton *&ptr1, QString label1, QPushButton *&ptr2, QString label2) |
Adds two buttons in a row. More... | |
void | addSeparator_ () |
Adds a horizontal line as a separator. More... | |
void | finishAdding_ () |
Adds buttons common to all visualizers. More... | |
Protected Member Functions inherited from BaseVisualizer< PeptideIdentification > | |
virtual void | update_ () |
Updates the GUI from the temp_ variable. More... | |
Class that displays all meta information for PeptideIdentification objects.
This class provides all functionality to view the meta information of an object of type PeptideIdentification.
PeptideIdentificationVisualizer | ( | bool | editable = false , |
QWidget * | parent = nullptr , |
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MetaDataBrowser * | caller = nullptr |
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Constructor.
void load | ( | PeptideIdentification & | s, |
int | tree_item_id | ||
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Loads the meta data from the object to the viewer. Gets the id of the item in the tree as parameter.
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overrideslot |
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protectedslot |
Undo the changes made in the GUI.
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protectedslot |
Updates the tree by calling MetaDataBrowser::updatePeptideHits(PeptideIdentification, int)
Calls MetaDataBrowser::updatePeptideHits(PeptideIdentification, int).
Updates the tree depending of the protein significance threshold.
Only ProteinHits with a score superior or equal to the current threshold will be displayed.
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Threshold for filtering by score.
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Pointer to MetaDataBrowser.
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The id of the item in the tree.