OpenMS
2.5.0
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[experimental class] given a peptide quantitation, infer corresponding protein quantities More...
#include <OpenMS/ANALYSIS/QUANTITATION/ProteinInference.h>
Public Types | |
typedef Peak2D::IntensityType | IntensityType |
Public Member Functions | |
ProteinInference () | |
Constructor. More... | |
ProteinInference (const ProteinInference &cp) | |
copy constructor More... | |
ProteinInference & | operator= (const ProteinInference &rhs) |
assignment operator More... | |
void | infer (ConsensusMap &consensus_map, const UInt reference_map) |
given a peptide quantitation, infer corresponding protein quantities More... | |
Protected Member Functions | |
void | infer_ (ConsensusMap &consensus_map, const size_t protein_idenfication_index, const UInt reference_map) |
bool | sortByUnique_ (std::vector< PeptideHit > &peptide_hits_local, const bool is_higher_score_better) |
[experimental class] given a peptide quantitation, infer corresponding protein quantities
Infers protein ratios from peptide ratios (currently using unique peptides only). Use the IDMapper class to add protein and peptide information to a quantitative ConsensusMap prior to this step.
typedef Peak2D::IntensityType IntensityType |
ProteinInference | ( | ) |
Constructor.
ProteinInference | ( | const ProteinInference & | cp | ) |
copy constructor
void infer | ( | ConsensusMap & | consensus_map, |
const UInt | reference_map | ||
) |
given a peptide quantitation, infer corresponding protein quantities
Infers protein ratios from peptide ratios (currently using unique peptides only). Use the IDMapper class to add protein and peptide information to a quantitative ConsensusMap prior to this step.
consensus_map | Peptide quantitation with ProteinIdentifications attached, where Protein quantitation will be attached |
reference_map | Index of (iTRAQ) reference channel within the consensus map |
Exception::MissingInformation | if Protein/PeptideIdentifications are missing |
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protected |
ProteinInference& operator= | ( | const ProteinInference & | rhs | ) |
assignment operator
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protected |