- a -

• AASequence : ModificationsDB
• AASequence::ConstIterator : AASequence::Iterator

- c -

• ConsensusMapNormalizerAlgorithmThreshold : ConsensusMapNormalizerAlgorithmMedian
• ConstRefVector : ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
• CrossLinksDB : ModificationsDB

- d -

• DBSuitability_friend : DBSuitability
• DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > : ProteaseDB
• DigestionEnzymeDB< DigestionEnzymeRNA, RNaseDB > : RNaseDB

- e -

• EmgGradientDescent_friend : EmgGradientDescent

- h -

• HashGrid : HashGrid< Cluster >::ConstIterator , HashGrid< Cluster >::Iterator

- i -

• IDFilter : IdentificationData
• Internal::ClassTest::isFileSimilar : FuzzyStringComparator
• Internal::ClassTest::testStringSimilar : FuzzyStringComparator
• Internal::ConsensusXMLHandler : IdXMLFile
• Internal::FeatureXMLHandler : IdXMLFile
• IsotopeWaveletTransform : IsotopeWaveletTransform< PeakType >::TransSpectrum

- k -

• KDTree : _Base_iterator

- l -

• LogStream : LogStreamBuf

- m -

• MapAlignmentTransformer : IdentificationData
• MRMFeatureSelector_test : MRMFeatureSelector
• MSPGenericFile_friend : MSPGenericFile
• MzTabMFile : MzTabFile

- n -

• NASequence::ConstIterator : NASequence::Iterator

- o -

• operator!= : _Iterator< _Val, _Ref, _Ptr > , DataValue , ParamValue
• operator+ : ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
• operator- : ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
• operator< : Compomer , DataValue , MSstatsFile::MSstatsLine_ , MSstatsFile::MSstatsTMTLine_ , ParamValue , TriqlerFile::TriqlerLine_
• operator<< : AASequence , AccurateMassSearchResult , Adduct , Compomer , ConnectedComponent , ControlledVocabulary , DataValue , DigestionEnzyme , DigestionEnzymeProtein , Element , EmpiricalFormula , LogConfigHandler , BasicStatistics< RealT > , NASequence , ParamValue , Peak2D , Residue , Ribonucleotide , StreamHandler
• operator== : _Iterator< _Val, _Ref, _Ptr > , Adduct , Compomer , DataValue , ParamValue
• operator> : DataValue , ParamValue
• operator>> : AASequence

- p -

• Painter1DPeak : Plot1DCanvas
• PeptideIdentificationVisualizer : MetaDataBrowser
• Plot3DCanvas : Plot3DOpenGLCanvas
• Plot3DOpenGLCanvas : Plot3DCanvas
• ProteinIdentificationVisualizer : MetaDataBrowser
• PScore : AScore

- q -

• QTCluster : QTCluster::BulkData

- r -

• Residue : ModificationsDB
• ResidueDB : Residue
• RibonucleotideDB : Ribonucleotide

- s -

• singletonsNeedNoFriends : Factory< FactoryProduct > , SingletonRegistry
• SvmTheoreticalSpectrumGeneratorTrainer : SvmTheoreticalSpectrumGenerator
• swap : ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , ConstRefVector< ContainerT >
• SwathGUILock : SwathTabWidget

- t -

• TestTOPPView : TOPPViewBase
• TOPPBase : File