Classes
struct	BinaryDataArray
	The datastructures used by the OpenSwath interfaces. More...

struct	ChromatogramMeta
	Identifying information for a chromatogram. More...

struct	Chromatogram
	A single chromatogram. More...

struct	SpectrumMeta
	Identifying information for a spectrum. More...

struct	Spectrum
	The structure that captures the generation of a peak list (including the underlying acquisitions) More...

class	IMSDataConsumer
	The interface of a consumer of spectra and chromatograms. More...

class	ISpectraReader
	The interface of read-access to a list of spectra. More...

class	IChromatogramsReader
	The interface of read-access to a list of chromatograms. More...

class	ISpectraWriter

class	IChromatogramsWriter

Typedefs
typedef boost::shared_ptr< BinaryDataArray >	BinaryDataArrayPtr

typedef boost::shared_ptr< ChromatogramMeta >	ChromatogramMetaPtr

typedef boost::shared_ptr< Chromatogram >	ChromatogramPtr

typedef boost::shared_ptr< SpectrumMeta >	SpectrumMetaPtr

typedef boost::shared_ptr< Spectrum >	SpectrumPtr

typedef IMSDataConsumer	IMSDataConsumer

typedef boost::shared_ptr< ISpectraReader >	SpectraReaderPtr

typedef boost::shared_ptr< IChromatogramsReader >	ChromatogramsReaderPtr

typedef boost::shared_ptr< ISpectraWriter >	SpectraWriterPtr

typedef boost::shared_ptr< IChromatogramsWriter >	ChromatogramsWriterPtr

Class Documentation

◆ OpenMS::Interfaces::BinaryDataArray

struct OpenMS::Interfaces::BinaryDataArray

The datastructures used by the OpenSwath interfaces.

Many of them are closely related to Proteowizard data structures, originally written by Darren Kessner and released under the Apache 2.0 licence and can be found in the file pwiz/data/msdata/MSData.hpp.

Original author: Darren Kessner darre.nosp@m.n@pr.nosp@m.oteow.nosp@m.izar.nosp@m.d.org

The following datastructures are used :

BinaryDataArray : a struct that holds a std::vector<double> with the data
ChromatogramMeta : meta information of a chromatogram (index)
Chromatogram : chromatogram data. Contains a vector of pointers to BinaryDataArray, the first one is time array (RT), the second one is intensity
SpectrumMeta : meta information of a spectrum (index, identifier, RT, ms_level)
Spectrum : spectrum data. Contains a vector of pointers to BinaryDataArray, the first one is mz array, the second one is intensity The structure into which encoded binary data goes.

Collaboration diagram for BinaryDataArray:

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