DefaultChromHandler Class Reference

Default handler that delegates to SRM/MRM or DIA handler depending on input. More...

#include <OpenMS/ANALYSIS/TARGETED/DefaultChromHandler.h>

Inheritance diagram for DefaultChromHandler:

Collaboration diagram for DefaultChromHandler:

Public Member Functions
	DefaultChromHandler ()
	~DefaultChromHandler () override
std::vector< MSChromatogram >	collectIrtChromatogramsForIrt (const std::vector< OpenSwath::SwathMap > &swath_maps, const OpenSwath::LightTargetedExperiment &irt_transitions, const Param &mrm_mapping_param, const ChromExtractParams &cp, const TransformationDescription &trafo=TransformationDescription(), bool pasef=false, bool load_into_memory=false) override
	Collect iRT chromatograms from the swath maps and try to map them to the provided iRT transitions.
std::vector< MSChromatogram >	extractAndMapChromatogramsForTransitions (const std::vector< OpenSwath::SwathMap > &swath_maps, const OpenSwath::LightTargetedExperiment &transition_exp, const ChromExtractParams &cp, const Param &mrm_mapping_param) override
	Extract (or select) chromatograms for the given transitions and return mapped & filtered chromatograms.
Public Member Functions inherited from IChromatogramHandler
	IChromatogramHandler ()=default
virtual	~IChromatogramHandler ()=default

Private Attributes
std::unique_ptr< MRMChromHandler >	mrm_
std::unique_ptr< DIAChromHandler >	dia_

Additional Inherited Members
Static Public Member Functions inherited from IChromatogramHandler
static std::unique_ptr< IChromatogramHandler >	createDefault ()
	Factory: create the default handler (currently SRM/MRM-based)

Detailed Description

Default handler that delegates to SRM/MRM or DIA handler depending on input.

Constructor & Destructor Documentation

DefaultChromHandler()

DefaultChromHandler

(

)

~DefaultChromHandler()

~DefaultChromHandler ( )

override

Member Function Documentation

collectIrtChromatogramsForIrt()

std::vector< MSChromatogram > collectIrtChromatogramsForIrt ( const std::vector< OpenSwath::SwathMap > &  swath_maps, const OpenSwath::LightTargetedExperiment &  irt_transitions, const Param &  mrm_mapping_param, const ChromExtractParams &  cp, const TransformationDescription &  trafo = TransformationDescription(), bool  pasef = false, bool  load_into_memory = false  )

overridevirtual

Collect iRT chromatograms from the swath maps and try to map them to the provided iRT transitions.

Implements IChromatogramHandler.

extractAndMapChromatogramsForTransitions()

std::vector< MSChromatogram > extractAndMapChromatogramsForTransitions ( const std::vector< OpenSwath::SwathMap > &  swath_maps, const OpenSwath::LightTargetedExperiment &  transition_exp, const ChromExtractParams &  cp, const Param &  mrm_mapping_param  )

overridevirtual

Extract (or select) chromatograms for the given transitions and return mapped & filtered chromatograms.

Implements IChromatogramHandler.

Member Data Documentation

dia_

std::unique_ptr<DIAChromHandler> dia_

private

mrm_

std::unique_ptr<MRMChromHandler> mrm_

private