MzMLHandlerHelper Class Reference

#include <OpenMS/FORMAT/HANDLERS/MzMLHandlerHelper.h>

Classes
struct	BinaryData
	Binary data representation. More...

Static Public Member Functions
static String	getCompressionTerm_ (const PeakFileOptions &opt, MSNumpressCoder::NumpressConfig np_compression, String indent="", bool use_numpress=false)
	Returns the appropriate compression term given the PeakFileOptions and the NumpressConfig. More...
static void	writeFooter_ (std::ostream &os, const PeakFileOptions &options_, std::vector< std::pair< std::string, long > > &spectra_offsets, std::vector< std::pair< std::string, long > > &chromatograms_offsets)
	Write the mzML footer the appropriate compression term given the PeakFileOptions and the NumpressConfig. More...
static void	decodeBase64Arrays (std::vector< BinaryData > &data_, bool skipXMLCheck=false)
	Decode Base64 arrays and write into data_ array. More...
static void	computeDataProperties_ (std::vector< BinaryData > &data_, bool &precision_64, SignedSize &index, String index_name)
static bool	handleBinaryDataArrayCVParam (std::vector< BinaryData > &data_, const String &accession, const String &value, const String &name)

Static Private Member Functions
static void	warning (int mode, const String &msg, UInt line=0, UInt column=0)
	Also display some warning message when appropriate (see XMLHandler) More...

Member Function Documentation

computeDataProperties_()

static void computeDataProperties_ ( std::vector< BinaryData > &  data_, bool &  precision_64, SignedSize &  index, String  index_name  )

static

decodeBase64Arrays()

static void decodeBase64Arrays ( std::vector< BinaryData > &  data_, bool  skipXMLCheck = false  )

static

Decode Base64 arrays and write into data_ array.

Parameters

data_	The input and output
skipXMLCheck	whether to skip cleaning the Base64 arrays and remove whitespaces

getCompressionTerm_()

static String getCompressionTerm_ ( const PeakFileOptions &  opt, MSNumpressCoder::NumpressConfig  np_compression, String  indent = "", bool  use_numpress = false  )

static

Returns the appropriate compression term given the PeakFileOptions and the NumpressConfig.

handleBinaryDataArrayCVParam()

static bool handleBinaryDataArrayCVParam ( std::vector< BinaryData > &  data_, const String &  accession, const String &  value, const String &  name  )

static

warning()

static void warning ( int  mode, const String &  msg, UInt  line = 0, UInt  column = 0  )

staticprivate

Also display some warning message when appropriate (see XMLHandler)

writeFooter_()

static void writeFooter_ ( std::ostream &  os, const PeakFileOptions &  options_, std::vector< std::pair< std::string, long > > &  spectra_offsets, std::vector< std::pair< std::string, long > > &  chromatograms_offsets  )

static

Write the mzML footer the appropriate compression term given the PeakFileOptions and the NumpressConfig.