MS2Feature Class Reference

#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2Feature.h>

Inheritance diagram for MS2Feature:

Public Member Functions
	~MS2Feature ()
	MS2Feature ()
	MS2Feature (MS2Fragment *)
	MS2Feature (double iPrecursorMZ, double iTR, int iChrg, int iApexScan)
	MS2Feature (const MS2Feature &)
	MS2Feature (const MS2Feature *)
bool	operator== (const MS2Feature &)
MS2Feature &	operator<= (const MS2Feature &)
MS2Feature &	operator>= (const MS2Feature &)
MS2Feature &	operator< (const MS2Feature &)
MS2Feature &	operator> (const MS2Feature &)
void	show_info ()
void	setID (int in)
int	getID ()
Public Member Functions inherited from ClusteredMS2ConsensusSpectrum
	~ClusteredMS2ConsensusSpectrum ()
	ClusteredMS2ConsensusSpectrum ()
	ClusteredMS2ConsensusSpectrum (MS2Fragment *)
	ClusteredMS2ConsensusSpectrum (MS2ConsensusSpectrum *)
	ClusteredMS2ConsensusSpectrum (double, double, int, int)
	ClusteredMS2ConsensusSpectrum (const ClusteredMS2ConsensusSpectrum &)
	ClusteredMS2ConsensusSpectrum (const ClusteredMS2ConsensusSpectrum *)
bool	operator== (const ClusteredMS2ConsensusSpectrum &)
ClusteredMS2ConsensusSpectrum &	operator<= (const ClusteredMS2ConsensusSpectrum &)
ClusteredMS2ConsensusSpectrum &	operator>= (const ClusteredMS2ConsensusSpectrum &)
ClusteredMS2ConsensusSpectrum &	operator< (const ClusteredMS2ConsensusSpectrum &)
ClusteredMS2ConsensusSpectrum &	operator> (const ClusteredMS2ConsensusSpectrum &)
void	constructClusteredConsenusSpectraFragments (MS2ConsensusSpectrum *)
void	addMS2ConsensusSpectrum (MS2ConsensusSpectrum *)
void	extractFragmentsFromSpectra (MS2ConsensusSpectrum *)
void	mergeMS2Fragments (MS2Fragment *, MS2Fragment *)
void	plotCombinedSpectra ()
void	removeOutlierFragments ()
int	getNumberOfSpectraScan ()
std::vector< int >::iterator	getSpectraScanNumberStart ()
std::vector< int >::iterator	getSpectraScanNumberEnd ()
Public Member Functions inherited from MS2ConsensusSpectrum
	~MS2ConsensusSpectrum ()
	MS2ConsensusSpectrum ()
	MS2ConsensusSpectrum (MS2Fragment *)
	MS2ConsensusSpectrum (double iPrecursorMZ, double iTR, int iChrg, int iApexScan)
	MS2ConsensusSpectrum (const MS2ConsensusSpectrum &)
	MS2ConsensusSpectrum (const MS2ConsensusSpectrum *)
MS2ConsensusSpectrum &	operator= (const MS2ConsensusSpectrum &)
bool	operator== (const MS2ConsensusSpectrum &)
MS2ConsensusSpectrum &	operator<= (const MS2ConsensusSpectrum &)
MS2ConsensusSpectrum &	operator>= (const MS2ConsensusSpectrum &)
MS2ConsensusSpectrum &	operator< (const MS2ConsensusSpectrum &)
MS2ConsensusSpectrum &	operator> (const MS2ConsensusSpectrum &)
double	getLCElutionPeakSimilarity (MS2Fragment *)
void	addMS2Fragment (MS2Fragment *)
void	computeMS2SpectrumParameters ()
void	show_info ()
MS2Fragment *	findMS2Fragment (double)
double	getPrecursorMZ ()
double	getTR ()
double	getStartTR ()
double	getEndTR ()
void	setPrecursorChrg (int in)
int	getPrecursorChrg ()
int	getApexScan ()
int	getStartScan ()
int	getEndScan ()
int	getNbMS2Fragments ()
std::multimap< double, MS2Fragment >::iterator	getMS2FragmentPeakStart ()
std::multimap< double, MS2Fragment >::iterator	getMS2FragmentPeakEnd ()
std::multimap< double, MS2Fragment > *	getMS2FragmentMap ()

Private Attributes
int	ID

Additional Inherited Members
Public Attributes inherited from MS2ConsensusSpectrum
double	precursorMZ
double	TR
Static Public Attributes inherited from MS2ConsensusSpectrum
static double	MS2_MZ_TOLERANCE
Protected Attributes inherited from MS2ConsensusSpectrum
double	startTR
double	endTR
int	z
int	apexScan
int	startScan
int	endScan

Constructor & Destructor Documentation

~MS2Feature()

~MS2Feature

(

)

MS2Feature() [1/5]

MS2Feature ( )

inline

References OpenMS::operator<(), and KDTree::operator==().

MS2Feature() [2/5]

MS2Feature

(

MS2Fragment *

)

MS2Feature() [3/5]

MS2Feature	(	double	iPrecursorMZ,
		double	iTR,
		int	iChrg,
		int	iApexScan
	)

MS2Feature() [4/5]

MS2Feature

(

const MS2Feature &

)

MS2Feature() [5/5]

MS2Feature

(

const MS2Feature *

)

Member Function Documentation

getID()

int getID ( )

inline

operator<()

MS2Feature& operator<

(

const MS2Feature &

)

operator<=()

MS2Feature& operator<=

(

const MS2Feature &

)

operator==()

bool operator==

(

const MS2Feature &

)

operator>()

MS2Feature& operator>

(

const MS2Feature &

)

operator>=()

MS2Feature& operator>=

(

const MS2Feature &

)

setID()

void setID ( int  in )

inline

show_info()

void show_info

(

)

Member Data Documentation

ID

int ID

private