Scoring of an spectrum using SONAR data. More...
#include <OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h>
Inheritance diagram for SONARScoring:
Public Member Functions | |
| void | computeSonarScores (OpenSwath::IMRMFeature *imrmfeature, const std::vector< OpenSwath::LightTransition > &transitions, std::vector< OpenSwath::SwathMap > &swath_maps, OpenSwath_Scores &scores) |
Constructors and Destructor | |
| SONARScoring () | |
| Default constructor. More... | |
| virtual | ~SONARScoring () |
| Destructor. More... | |
 Public Member Functions inherited from DefaultParamHandler | |
| DefaultParamHandler (const String &name) | |
| Constructor with name that is displayed in error messages. More... | |
| DefaultParamHandler (const DefaultParamHandler &rhs) | |
| Copy constructor. More... | |
| virtual | ~DefaultParamHandler () |
| Destructor. More... | |
| virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) |
| Assignment operator. More... | |
| virtual bool | operator== (const DefaultParamHandler &rhs) const |
| Equality operator. More... | |
| void | setParameters (const Param ¶m) |
| Sets the parameters. More... | |
| const Param & | getParameters () const |
| Non-mutable access to the parameters. More... | |
| const Param & | getDefaults () const |
| Non-mutable access to the default parameters. More... | |
| const String & | getName () const |
| Non-mutable access to the name. More... | |
| void | setName (const String &name) |
| Mutable access to the name. More... | |
| const std::vector< String > & | getSubsections () const |
| Non-mutable access to the registered subsections. More... | |
Private Member Functions | |
| void | computeXCorr_ (std::vector< std::vector< double > > &sonar_profiles, double &xcorr_coelution_score, double &xcorr_shape_score) |
| SONARScoring (const SONARScoring &rhs) | |
| Copy constructor (algorithm class) More... | |
| SONARScoring & | operator= (const SONARScoring &rhs) |
| Assignment operator (algorithm class) More... | |
| void | updateMembers_ () |
| Synchronize members with param class. More... | |
Private Attributes | |
| double | dia_extract_window_ |
| bool | dia_centroided_ |
Additional Inherited Members | |
| Protected Member Functions inherited from DefaultParamHandler | |
| void | defaultsToParam_ () |
| Updates the parameters after the defaults have been set in the constructor. More... | |
| Protected Attributes inherited from DefaultParamHandler | |
| Param | param_ |
| Container for current parameters. More... | |
| Param | defaults_ |
| Container for default parameters. This member should be filled in the constructor of derived classes! More... | |
| std::vector< String > | subsections_ |
| Container for registered subsections. This member should be filled in the constructor of derived classes! More... | |
| String | error_name_ |
| Name that is displayed in error messages during the parameter checking. More... | |
| bool | check_defaults_ |
| If this member is set to false no checking if parameters in done;. More... | |
| bool | warn_empty_defaults_ |
| If this member is set to false no warning is emitted when defaults are empty;. More... | |
Detailed Description
Scoring of an spectrum using SONAR data.
Constructor & Destructor Documentation
◆ SONARScoring() [1/2]
| SONARScoring | ( | ) |
Default constructor.
◆ ~SONARScoring()
|
inlinevirtual |
Destructor.
◆ SONARScoring() [2/2]
|
private |
Copy constructor (algorithm class)
Member Function Documentation
◆ computeSonarScores()
| void computeSonarScores | ( | OpenSwath::IMRMFeature * | imrmfeature, |
| const std::vector< OpenSwath::LightTransition > & | transitions, | ||
| std::vector< OpenSwath::SwathMap > & | swath_maps, | ||
| OpenSwath_Scores & | scores | ||
| ) |
◆ computeXCorr_()
|
private |
◆ operator=()
|
private |
Assignment operator (algorithm class)
◆ updateMembers_()
|
privatevirtual |
Synchronize members with param class.
Reimplemented from DefaultParamHandler.
Member Data Documentation
◆ dia_centroided_
|
private |
◆ dia_extract_window_
|
private |