An abstract base class implementing a transforming wrapper around spectrum access. More...
#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessTransforming.h>
Public Member Functions | |
| SpectrumAccessTransforming (OpenSwath::SpectrumAccessPtr sptr) | |
| virtual | ~SpectrumAccessTransforming ()=0 |
| virtual boost::shared_ptr< ISpectrumAccess > | lightClone () const =0 |
| Light clone operator to produce a copy for concurrent read access. More... | |
| virtual OpenSwath::SpectrumPtr | getSpectrumById (int id) |
| Return a pointer to a spectrum at the given id. More... | |
| virtual OpenSwath::SpectrumMeta | getSpectrumMetaById (int id) const |
| Returns the meta information for a spectrum. More... | |
| virtual std::vector< std::size_t > | getSpectraByRT (double RT, double deltaRT) const |
| Return a vector of ids of spectra that are within RT +/- deltaRT. More... | |
| virtual size_t | getNrSpectra () const |
| Returns the number of spectra available. More... | |
| virtual OpenSwath::ChromatogramPtr | getChromatogramById (int id) |
| Return a pointer to a chromatogram at the given id. More... | |
| virtual size_t | getNrChromatograms () const |
| Returns the number of chromatograms available. More... | |
| virtual std::string | getChromatogramNativeID (int id) const |
| Returns the native id of the chromatogram at the given id. More... | |
 Public Member Functions inherited from ISpectrumAccess | |
| virtual | ~ISpectrumAccess () |
| Destructor. More... | |
Protected Attributes | |
| OpenSwath::SpectrumAccessPtr | sptr_ |
Detailed Description
An abstract base class implementing a transforming wrapper around spectrum access.
Constructor & Destructor Documentation
◆ SpectrumAccessTransforming()
|
explicit |
◆ ~SpectrumAccessTransforming()
|
pure virtual |
Member Function Documentation
◆ getChromatogramById()
|
virtual |
Return a pointer to a chromatogram at the given id.
Implements ISpectrumAccess.
◆ getChromatogramNativeID()
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virtual |
Returns the native id of the chromatogram at the given id.
Implements ISpectrumAccess.
◆ getNrChromatograms()
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virtual |
Returns the number of chromatograms available.
Implements ISpectrumAccess.
◆ getNrSpectra()
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virtual |
Returns the number of spectra available.
Implements ISpectrumAccess.
◆ getSpectraByRT()
Return a vector of ids of spectra that are within RT +/- deltaRT.
Implements ISpectrumAccess.
◆ getSpectrumById()
|
virtual |
Return a pointer to a spectrum at the given id.
Implements ISpectrumAccess.
Reimplemented in SpectrumAccessQuadMZTransforming.
◆ getSpectrumMetaById()
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virtual |
Returns the meta information for a spectrum.
Implements ISpectrumAccess.
◆ lightClone()
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pure virtual |
Light clone operator to produce a copy for concurrent read access.
This function guarantees to produce a copy of the underlying object that provides thread-safe concurrent read access to the underlying data. It should be implemented with minimal copy-overhead to make this operation as fast as possible.
To use this function, each thread should call this function to produce an individual copy on which it can operate.
Implements ISpectrumAccess.
Implemented in SpectrumAccessQuadMZTransforming.
Member Data Documentation
◆ sptr_
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protected |