- a -

• AASequence::ConstIterator : AASequence::Iterator

- c -

• ConsensusMapNormalizerAlgorithmThreshold : ConsensusMapNormalizerAlgorithmMedian
• ConsensusXMLFile : IdXMLFile
• ConstRefVector : ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
• CrossLinksDB : ModificationsDB

- d -

• DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > : ProteaseDB
• DigestionEnzymeDB< DigestionEnzymeRNA, RNaseDB > : RNaseDB

- e -

• EmgGradientDescent_friend : EmgGradientDescent

- f -

• FeatureFinderAlgorithmSHCtrl : SuperHirnParameters
• FeatureXMLFile : IdXMLFile

- g -

• GUILock : SwathTabWidget

- h -

• HashGrid : HashGrid< Cluster >::ConstIterator , HashGrid< Cluster >::Iterator

- i -

• IDFilter : IdentificationData
• Internal::ClassTest::isFileSimilar : FuzzyStringComparator
• Internal::ClassTest::testStringSimilar : FuzzyStringComparator
• IsotopeWaveletTransform : IsotopeWaveletTransform< PeakType >::TransSpectrum

- k -

• KDTree : _Base_iterator

- l -

• LogStream : LogStreamBuf

- m -

• MRMFeatureSelector_test : MRMFeatureSelector
• MSPGenericFile_friend : MSPGenericFile

- n -

• NASequence::ConstIterator : NASequence::Iterator

- o -

• operator!= : _Iterator< _Val, _Ref, _Ptr > , DataValue
• operator+ : ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
• operator- : ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
• operator< : Compomer , DataValue , MSstatsFile::MSstatsLine_ , MSstatsFile::MSstatsTMTLine_
• operator<< : AASequence , AccurateMassSearchResult , Adduct , Compomer , ConnectedComponent , ControlledVocabulary , DataValue , DigestionEnzyme , DigestionEnzymeProtein , Element , EmpiricalFormula , LogConfigHandler , BasicStatistics< RealT > , NASequence , Peak2D , QCBase::Status , RawData , Residue , Ribonucleotide , StreamHandler
• operator== : _Iterator< _Val, _Ref, _Ptr > , Adduct , Compomer , DataValue
• operator> : DataValue
• operator>> : AASequence

- p -

• PeptideIdentificationVisualizer : MetaDataBrowser
• ProteinIdentificationVisualizer : MetaDataBrowser
• PScore : AScore

- q -

• QTCluster : QTCluster::BulkData

- r -

• ResidueDB : Residue
• RibonucleotideDB : Ribonucleotide

- s -

• singletonsNeedNoFriends : Factory< FactoryProduct > , SingletonRegistry
• Spectrum3DCanvas : Spectrum3DOpenGLCanvas
• Spectrum3DOpenGLCanvas : Spectrum3DCanvas
• SvmTheoreticalSpectrumGeneratorTrainer : SvmTheoreticalSpectrumGenerator
• swap : ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , ConstRefVector< ContainerT >

- t -

• TestTOPPView : TOPPViewBase
• TOPPBase : File