PEFFFile.h File Reference

#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/CHEMISTRY/AASequence.h>
#include <OpenMS/CHEMISTRY/ProteaseDigestion.h>
#include <fstream>
#include <limits>
#include <map>
#include <vector>

Include dependency graph for PEFFFile.h:

Go to the source code of this file.

Classes
struct	PEFFModification
	Represents a PEFF modification annotation. More...
struct	PEFFVariantSimple
	Represents a simple PEFF variant (single amino acid substitution). More...
struct	PEFFVariantComplex
	Represents a complex PEFF variant (insertion, deletion, or substitution of multiple amino acids). More...
struct	PEFFProcessedRegion
	Represents a PEFF processed region (signal peptide, transit peptide, etc.). More...
struct	PEFFDisulfideBond
	Represents a disulfide bond annotation in PEFF. More...
struct	PEFFEntry
	Represents a single entry in a PEFF file with all annotations. More...
struct	PEFFCustomKeyDef
	Represents a custom key definition from the PEFF header. More...
struct	PEFFDatabaseMetadata
	Metadata from a PEFF database header section. More...
class	PEFFFile
	This class serves for reading and writing PEFF (PSI Extended FASTA Format) files. More...

Namespaces
namespace	OpenMS
	Main OpenMS namespace.