- t -

• tabAt_() : EnhancedTabBar , TOPPASTabBar
• tableExists() : SqliteConnector
• tag() : DocumentIDTagger
• tag_peaks_with_spectrum_ID() : LCMS
• Tagger() : Tagger
• Tagging() : Tagging
• TaggingVisualizer() : TaggingVisualizer
• TargetedExperiment() : TargetedExperiment
• targetedMatching() : TargetedSpectraExtractor
• TargetedSpectraExtractor() : TargetedSpectraExtractor
• TemporaryFiles_() : File::TemporaryFiles_
• terminate() : GlobalExceptionHandler
• terminateCurrentPipeline() : TOPPASScene
• TextFile() : TextFile
• tgtIdx() : MatchedIterator< CONT_T, TRAIT, CONST_T >
• TheoreticalSpectrumGenerationDialog() : TheoreticalSpectrumGenerationDialog
• TheoreticalSpectrumGenerator() : TheoreticalSpectrumGenerator
• TheoreticalSpectrumGeneratorXLMS() : TheoreticalSpectrumGeneratorXLMS
• ThresholdMower() : ThresholdMower
• TIC() : TIC
• TICFilter() : TICFilter
• tie() : PeptideIndexing::PeptideProteinMatchInformation
• tileHorizontal() : TOPPViewBase
• tileVertical() : TOPPViewBase
• timedOut() : MascotRemoteQuery
• timeMessure() : Spectrum3DOpenGLCanvas
• timeOut() : NetworkGetRequest
• timerTriggered_() : FileWatcher
• TMTElevenPlexQuantitationMethod() : TMTElevenPlexQuantitationMethod
• TMTSixPlexQuantitationMethod() : TMTSixPlexQuantitationMethod
• TMTSixteenPlexQuantitationMethod() : TMTSixteenPlexQuantitationMethod
• TMTTenPlexQuantitationMethod() : TMTTenPlexQuantitationMethod
• toBool() : DataValue
• toBracketString() : AASequence
• toCellString() : MzTabBoolean , MzTabDouble , MzTabDoubleList , MzTabInteger , MzTabIntegerList , MzTabModification , MzTabModificationList , MzTabNullAbleInterface , MzTabParameter , MzTabParameterList , MzTabSpectraRef , MzTabString , MzTabStringList
• toChar() : DataValue
• toCSVString() : QcMLFile::Attachment
• today() : Date
• toDouble() : String , StringUtils
• toDoubleList() : DataValue
• toExpandedString() : MassDecomposition
• TOFCalibration() : TOFCalibration
• toFloat() : String , StringUtils
• toggleAdvancedMode() : ParamEditor
• toggleAxisLegends() : TOPPViewBase
• toggleBreakpoint() : TOPPASToolVertex
• toggleGridLines() : TOPPViewBase
• toggleInterestingMZs() : TOPPViewBase
• toggleMirrorView() : Spectrum1DWidget
• toggleProjections() : Spectrum2DCanvas , Spectrum2DWidget , TOPPViewBase
• toInt() : String , StringUtils
• toIntList() : DataValue
• tokenize_() : EnzymaticDigestion
• toLower() : String , StringListUtils , StringUtils
• toMap() : EmpiricalFormula
• toNative_() : StringManager
• toolCrashed() : TOPPASBase , TOPPASToolVertex
• toolCrashedSlot() : TOPPASToolVertex
• ToolDescription() : ToolDescription
• ToolDescriptionFile() : ToolDescriptionFile
• ToolDescriptionHandler() : ToolDescriptionHandler
• ToolDescriptionInternal() : ToolDescriptionInternal
• toolDroppedOnWidget() : TOPPASWidget
• toolFailed() : TOPPASBase , TOPPASToolVertex
• toolFailedSlot() : TOPPASToolVertex
• toolFinished() : TOPPASBase , TOPPASToolVertex
• toolFinishedSlot() : TOPPASToolVertex
• toolName_() : TOPPBase
• toolnameWithWhitespacesForFancyWordWrapping_() : TOPPASToolVertex
• toolScheduledSlot() : TOPPASToolVertex
• ToolsDialog() : ToolsDialog
• toolStarted() : TOPPASBase , TOPPASToolVertex
• toolStartedSlot() : TOPPASToolVertex
• topoSort() : TOPPASScene
• TOPPASBase() : TOPPASBase
• TOPPASEdge() : TOPPASEdge
• toppasFileDownloaded_() : TOPPASBase
• TOPPASFilenames() : TOPPASVertex::TOPPASFilenames
• TOPPASInputFileDialog() : TOPPASInputFileDialog
• TOPPASInputFileListVertex() : TOPPASInputFileListVertex
• TOPPASInputFilesDialog() : TOPPASInputFilesDialog
• TOPPASIOMappingDialog() : TOPPASIOMappingDialog
• TOPPASLogWindow() : TOPPASLogWindow
• TOPPASMergerVertex() : TOPPASMergerVertex
• TOPPASOutputFileListVertex() : TOPPASOutputFileListVertex
• TOPPASOutputFilesDialog() : TOPPASOutputFilesDialog
• TOPPASreadyRead() : TOPPASBase
• TOPPASResource() : TOPPASResource
• TOPPASResources() : TOPPASResources
• TOPPASScene() : TOPPASScene
• TOPPASSplitterVertex() : TOPPASSplitterVertex
• TOPPASTabBar() : TOPPASTabBar
• TOPPASToolConfigDialog() : TOPPASToolConfigDialog
• TOPPASToolVertex() : TOPPASToolVertex
• TOPPASTreeView() : TOPPASTreeView
• TOPPASVertex() : TOPPASVertex
• TOPPASVertexNameDialog() : TOPPASVertexNameDialog
• TOPPASWidget() : TOPPASWidget
• TOPPBase() : TOPPBase
• TOPPGNPSExport() : TOPPGNPSExport
• TOPPOpenPepXL() : TOPPOpenPepXL
• TOPPOpenPepXLLF() : TOPPOpenPepXLLF
• TOPPOpenSwathBase() : TOPPOpenSwathBase
• toppOutputReady() : TOPPASToolVertex
• TOPPProcess() : TOPPASScene::TOPPProcess
• TOPPViewBase() : TOPPViewBase
• TOPPViewIdentificationViewBehavior() : TOPPViewIdentificationViewBehavior
• TOPPViewOpenDialog() : TOPPViewOpenDialog
• TOPPViewPrefDialog() : TOPPViewPrefDialog
• TOPPViewSpectraViewBehavior() : TOPPViewSpectraViewBehavior
• TOPPXFDR() : TOPPXFDR
• toQString() : DataValue , String , StringUtils
• toString() : AASequence , Citation , DataFilters::DataFilter , DataValue , EmpiricalFormula , MassDecomposition , RANSACParam , MSstatsFile::MSstatsLine_ , MSstatsFile::MSstatsTMTLine_ , MultiGradient , MZTrafoModel , NASequence , StopWatch , TOPPASEdge
• toStringList() : DataValue
• totalMatchedCurrent() : XQuestScores
• toUniModString() : AASequence
• toUnmodifiedString() : AASequence
• toUpper() : String , StringListUtils , StringUtils
• toXMLString() : ControlledVocabulary::CVTerm , QcMLFile::Attachment , QcMLFile::QualityParameter
• TraceFitter() : TraceFitter
• TraceInfo() : Param::ParamIterator::TraceInfo
• trackNoise() : FIAMSDataProcessor
• train() : HiddenMarkovModel , MZTrafoModel , SVMWrapper
• trainModel() : SvmTheoreticalSpectrumGeneratorTrainer
• trainSecondaryTypes_() : SvmTheoreticalSpectrumGeneratorTrainer
• TraMLFile() : TraMLFile
• TraMLHandler() : TraMLHandler
• TraMLProduct() : TraMLProduct
• TraMLValidator() : TraMLValidator
• transferSubelements() : FeatureGroupingAlgorithm
• transform() : ContinuousWaveletTransformNumIntegration , MapAlignmentAlgorithmKD , MzMLFile , MzXMLFile , SpectraSTSimilarityScore , SqMassFile
• transform_() : IsotopeDistribution
• Transformation_() : IDDecoyProbability::Transformation_
• TransformationDescription() : TransformationDescription
• TransformationModel() : TransformationModel
• TransformationModelBSpline() : TransformationModelBSpline
• TransformationModelInterpolated() : TransformationModelInterpolated
• TransformationModelLinear() : TransformationModelLinear
• TransformationModelLowess() : TransformationModelLowess
• TransformationXMLFile() : TransformationXMLFile
• transformFirstPass_() : MzMLFile , MzXMLFile
• transformPoint_() : Spectrum3DOpenGLCanvas
• transformRetentionTimes() : MapAlignmentTransformer
• transformScore_() : PosteriorErrorProbabilityModel
• TransitionGroupOpenMS() : TransitionGroupOpenMS< SpectrumT, TransitionT >
• TransitionPQPFile() : TransitionPQPFile
• TransitionTSVFile() : TransitionTSVFile
• translateBackward_() : Spectrum2DCanvas , Spectrum3DCanvas , SpectrumCanvas
• translateForward_() : Spectrum2DCanvas , Spectrum3DCanvas , SpectrumCanvas
• translateIsotopeMatrix() : ItraqConstants
• translateLeft_() : Spectrum1DCanvas , Spectrum2DCanvas , Spectrum3DCanvas , SpectrumCanvas
• translateRight_() : Spectrum1DCanvas , Spectrum2DCanvas , Spectrum3DCanvas , SpectrumCanvas
• translateVisibleArea_() : Spectrum2DCanvas
• TransSpectrum() : IsotopeWaveletTransform< PeakType >::TransSpectrum
• trapezoidal_area() : FalseDiscoveryRate , ROCCurve
• trapezoidal_area_xEqy() : FalseDiscoveryRate
• traversePeptide_() : ProteinResolver
• traverseProtein_() : ProteinResolver
• treeGuidedAlignment() : MapAlignmentAlgorithmTreeGuided
• treeSize() : KDTreeFeatureMaps
• tricube_() : LowessSmoothing
• trim() : String , StringUtils
• trimIntensities() : IsotopeDistribution
• trimLeft() : IsotopeDistribution
• trimOpenMSfileURI() : MzIdentMLHandler
• trimRight() : IsotopeDistribution
• trimText_() : TOPPASLogWindow
• tryGnuplot() : PosteriorErrorProbabilityModel
• TSVToTargetedExperiment_() : TransitionTSVFile
• TwoDOptFunctor() : TwoDOptimization::TwoDOptFunctor
• TwoDOptimization() : TwoDOptimization
• typeToMZML() : FileTypes
• typeToName() : FileTypes