- u -

• uisTransitions() : MRMAssay
• UnableToCalibrate() : UnableToCalibrate
• UnableToCreateFile() : UnableToCreateFile
• UnableToFit() : UnableToFit
• uncompressString() : ZlibCompression
• undo_() : AcquisitionInfoVisualizer , AcquisitionVisualizer , ContactPersonVisualizer , DataProcessingVisualizer , DigestionVisualizer , DocumentIdentifierVisualizer , ExperimentalSettingsVisualizer , GradientVisualizer , HPLCVisualizer , InstrumentSettingsVisualizer , InstrumentVisualizer , IonDetectorVisualizer , IonSourceVisualizer , MassAnalyzerVisualizer , MetaInfoDescriptionVisualizer , MetaInfoVisualizer , ModificationVisualizer , PeptideHitVisualizer , PeptideIdentificationVisualizer , PrecursorVisualizer , ProductVisualizer , ProteinHitVisualizer , ProteinIdentificationVisualizer , SampleVisualizer , ScanWindowVisualizer , SoftwareVisualizer , SourceFileVisualizer , SpectrumSettingsVisualizer , TaggingVisualizer
• unify() : SpectrumSettings
• UnimodXMLFile() : UnimodXMLFile
• UnimodXMLHandler() : UnimodXMLHandler
• UniqueIdGenerator() : UniqueIdGenerator
• UniqueIdInterface() : UniqueIdInterface
• uniqueIdToIndex() : UniqueIdIndexer< RandomAccessContainer >
• Unit() : CVTerm::Unit
• united() : DRange< D >
• UnnormalizedComparator() : UnnormalizedComparator
• unquote() : String , StringUtils
• unregister() : LogStreamNotifier
• UnregisteredParameter() : UnregisteredParameter
• unregisterStream() : StreamHandler
• unselectAll() : TOPPASScene
• untargetedMatching() : TargetedSpectraExtractor
• unWeightData() : TransformationModel
• unWeightDatum() : TransformationModel
• update() : AsymmetricStatistics< RealT > , BasicStatistics< RealT > , Param , QTCluster
• update_() : AcquisitionInfoVisualizer , AcquisitionVisualizer , BaseVisualizer< ObjectType > , ContactPersonVisualizer , DataProcessingVisualizer , DigestionVisualizer , DocumentIdentifierVisualizer , ExperimentalSettingsVisualizer , GradientVisualizer , HPLCVisualizer , InstrumentSettingsVisualizer , InstrumentVisualizer , IonDetectorVisualizer , IonSourceVisualizer , MassAnalyzerVisualizer , MetaInfoDescriptionVisualizer , ModificationVisualizer , PeptideHitVisualizer , PrecursorVisualizer , ProductVisualizer , ProteinHitVisualizer , SampleVisualizer , ScanWindowVisualizer , SoftwareVisualizer , SourceFileVisualizer , Spectrum3DCanvas , SpectrumCanvas , SpectrumSettingsVisualizer , TaggingVisualizer
• update_CHRGMAP() : LCElutionPeak
• updateAddressLookup_() : IdentificationData
• updateAndMovePepIDs_() : IDMergerAlgorithm
• updateAxes() : SpectrumWidget
• updateBaseline() : FeatureFinderAlgorithmPickedHelperStructs::MassTraces
• updateBoxStates() : IsotopeWaveletTransform< PeakType >
• updateCache_() : LayerData
• updateChannelMap() : ItraqConstants
• updateClusterProxies_() : FeatureGroupingAlgorithmKD
• updateColor() : TOPPASEdge
• updateCombinedILP() : PSLPFormulation
• updateCurrentFeature_() : FeatureXMLFile
• updateCurrentOutputFileNames() : TOPPASToolVertex
• updateCurrentPath() : TOPPASBase , TOPPViewBase
• updateCursor_() : SpectrumCanvas
• updateData_() : SpectraIdentificationViewWidget
• updateEdgeColors() : TOPPASScene
• updateEditorGeometry() : ListEditorDelegate , ParamEditorDelegate
• updateEntries() : SpectraIdentificationViewWidget , SpectraViewWidget
• updateExclusionList_() : OfflinePrecursorIonSelection
• updateFeatureILPVariables() : PSLPFormulation
• updateFeatureVariant_() : ILPDCWrapper
• updateFilterBar() : TOPPViewBase
• updateGridDimension_() : HashGrid< Cluster >
• updateHitRanks() : IDFilter
• updateHoveringEdgePos() : TOPPASScene
• updateHScrollbar() : SpectrumCanvas , SpectrumWidget
• updateIntensityScale() : Spectrum3DOpenGLCanvas
• updateIsotopeMatrixFromStringList() : ItraqConstants
• updateIterativeWeightedMeanMZ() : MassTraceDetection
• updateLayer() : Spectrum1DCanvas , Spectrum2DCanvas , Spectrum3DCanvas , SpectrumCanvas
• updateLayerBar() : TOPPViewBase
• updateMaximum() : FeatureFinderAlgorithmPickedHelperStructs::MassTrace
• updateMeanMZ() : MassTrace
• updateMedianMZ() : MassTrace
• updateMedianRT() : MassTrace
• updateMembers_() : AbsoluteQuantitation , AccurateMassSearchEngine , AScore , BaseModel< D > , BayesianProteinInferenceAlgorithm , BiGaussFitter1D , BiGaussModel , BinnedSharedPeakCount , BinnedSpectralContrastAngle , BinnedSumAgreeingIntensities , CompNovoIdentificationBase , CompNovoIdentificationCID , CompNovoIonScoringBase , ConsensusIDAlgorithm , ConsensusIDAlgorithmPEPIons , ConsensusIDAlgorithmPEPMatrix , DefaultParamHandler , DetectabilitySimulation , DiaPrescore , DIAScoring , EGHFitter1D , EGHModel , EGHTraceFitter , ElutionPeakDetection , EmgFitter1D , EmgGradientDescent , EmgModel , ExtendedIsotopeFitter1D , ExtendedIsotopeModel , FeatureDeconvolution , FeatureDistance , FeatureFinderAlgorithmIsotopeWavelet , FeatureFinderAlgorithmMRM , FeatureFinderAlgorithmPicked , FeatureFinderIdentificationAlgorithm , FeatureFindingMetabo , FIAMSDataProcessor , Fitter1D , GaussFilter , GaussFitter1D , GaussModel , GaussTraceFitter , ICPLLabeler , IDMapper , IncludeExcludeTarget , InterpolationModel , IonizationSimulation , IsobaricChannelExtractor , IsobaricQuantifier , IsotopeFitter1D , IsotopeModel , ItraqEightPlexQuantitationMethod , ItraqFourPlexQuantitationMethod , ITRAQLabeler , KDTreeFeatureMaps , LevMarqFitter1D , LinearResampler , LinearResamplerAlign , LowessSmoothing , MapAlignmentAlgorithmKD , MapAlignmentAlgorithmPoseClustering , MapAlignmentAlgorithmSpectrumAlignment , MapAlignmentAlgorithmTreeGuided , MascotGenericFile , MascotRemoteQuery , MassDecompositionAlgorithm , MassTraceDetection , MaxLikeliFitter1D , MetaboliteFeatureDeconvolution , MetaboliteSpectralMatching , MRMDecoy , MRMFeatureFilter , MRMFeatureFinderScoring , MRMMapping , MRMTransitionGroupPicker , MSPGenericFile , MSSim , NLargest , Normalizer , NucleicAcidSpectrumGenerator , OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , OptimizePeakDeconvolution , PeakIntegrator , PeakPickerCWT , PeakPickerHiRes , PeakPickerIterative , PeakPickerMRM , PeptideAndProteinQuant , PeptideIndexing , PrecursorIonSelection , PrecursorIonSelectionPreprocessing , ProductModel< 2 > , RawMSSignalSimulation , ReactionMonitoringTransition , RTSimulation , SavitzkyGolayFilter , SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container > , SILACLabeler , SimplePairFinder , SimpleSearchEngineAlgorithm , SimpleTSGXLMS , SiriusAdapterAlgorithm , SONARScoring , SpectraMerger::SpectraDistance_ , SpectrumAnnotator , StablePairFinder , SvmTheoreticalSpectrumGenerator , SwathMapMassCorrection , TargetedSpectraExtractor , TheoreticalSpectrumGenerator , TheoreticalSpectrumGeneratorXLMS , TMTElevenPlexQuantitationMethod , TMTSixPlexQuantitationMethod , TMTSixteenPlexQuantitationMethod , TMTTenPlexQuantitationMethod , TraceFitter , TransitionTSVFile , TwoDOptimization , XFDRAlgorithm
• updateMenu() : TOPPASBase , TOPPViewBase
• updateMinElement() : DistanceMatrix< Value >
• updateObjFunction_() : PSLPFormulation
• updateOutpuMap_() : IsobaricIsotopeCorrector
• updatePeptideHitAnnotations_() : LayerData
• updatePercentageFactor_() : Spectrum1DCanvas
• updatePosition() : FuzzyStringComparator::InputLine
• updateProcessLog() : TOPPViewBase
• updateProjections() : Spectrum2DCanvas , Spectrum2DWidget
• updateProteinGroups() : IDFilter
• updateProteinReferences() : IDFilter
• updateRanges() : ConsensusMap , FeatureMap , LayerData , MSChromatogram , MSExperiment , MSSpectrum , RangeManager< D >
• updateRanges_() : RangeManager< D >
• updateRecentMenu_() : TOPPViewBase
• updateRTConstraintsForSequentialILP() : PSLPFormulation
• updateScores() : PosteriorErrorProbabilityModel
• updateScrollbars_() : Spectrum1DCanvas , Spectrum2DCanvas , SpectrumCanvas
• updateSmoothedMaxRT() : MassTrace
• updateSmoothedWeightedMeanRT() : MassTrace
• updateStepSizeConstraint() : PSLPFormulation
• updateTabBar() : TOPPASBase , TOPPViewBase
• updateToolBar() : TOPPASBase , TOPPViewBase
• updateTOPPOutputLog() : TOPPASBase
• updateTree_() : PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
• updateUniqueIdToIndex() : UniqueIdIndexer< RandomAccessContainer >
• updateViewBar() : TOPPViewBase
• updateViewMode_() : TOPPViewOpenDialog
• updateVScrollbar() : SpectrumCanvas , SpectrumWidget
• updateWeightedMeanMZ() : MassTrace
• updateWeightedMeanRT() : MassTrace
• updateWeightedMZsd() : MassTrace
• updateWhiteMSExperiment_() : MultiplexFiltering
• updateWindowTitle() : INIFileEditorWindow
• uploadProgress() : MascotRemoteQuery
• usage() : SysInfo::MemUsage
• usePPM() : CalibrationData