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OpenMS
2.7.0
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- d -
- d
: RANSACParam
- d_
: CubicSpline2d
- d_intensity_
: NucleicAcidSpectrumGenerator
- dashed_
: Annotation1DVerticalLineItem
- data
: BinaryDataArray
, MzMLHandler::ChromatogramData
, MzMLHandler::SpectrumData
, OSBinaryDataArray
, XCorrArrayType
- data_
: CalibrationData
, DataValue
, FASTAContainer< TFI_Vector >
, KDTreeFeatureNode
, BilinearInterpolation< Key, Value >
, LinearInterpolation< Key, Value >
, ParamValue
, QTCluster
, SimpleSVM
, TransformationDescription
, TransformationXMLFile
- data_bg_
: FASTAContainer< TFI_File >
- data_fg_
: FASTAContainer< TFI_File >
- data_given_
: TransformationModelLinear
- data_graph
: Pattern< TNeedle, FuzzyAC >
- data_host
: Pattern< TNeedle, FuzzyAC >
- data_id
: DataQuery
- data_keywordIndex
: PatternAuxData< TNeedle >
- data_lastState
: PatternAuxData< TNeedle >
- data_length_
: IsotopeWaveletTransform< PeakType >
- data_map_outputNodes
: Pattern< TNeedle, FuzzyAC >
- data_needleLength
: PatternAuxData< TNeedle >
- data_node_depth
: Pattern< TNeedle, FuzzyAC >
- data_processing_
: ChromatogramSettings
, ConsensusMap
, FeatureMap
, MzDataHandler
, MzXMLHandler
, MetaInfoDescription
, SpectrumSettings
- data_processings_
: MSQuantifications
- data_queries_
: IdentificationData
- data_query_lookup_
: IdentificationData
- data_query_ref
: MoleculeQueryMatch
- data_to_decode_
: MzDataHandler
- data_to_encode_
: MzDataHandler
- data_type
: MzMLHandlerHelper::BinaryData
- database
: DBSearchParam
, MzTabNucleicAcidSectionRow
, MzTabPeptideSectionRow
, MzTabProteinSectionRow
, MzTabPSMSectionRow
, MzTabSmallMoleculeSectionRow
- database_
: SequestInfile
- database_name_
: AccurateMassSearchEngine
- database_ref
: MzIdentMLDOMHandler::DBSequence
- database_version
: DBSearchParam
, MzTabNucleicAcidSectionRow
, MzTabPeptideSectionRow
, MzTabProteinSectionRow
, MzTabPSMSectionRow
, MzTabSmallMoleculeSectionRow
- database_version_
: AccurateMassSearchEngine
- date
: MzIdentMLDOMHandler::DatabaseInput
- date_
: MascotXMLHandler
, PepXMLFile
, ProteinIdentification
- date_time
: DataProcessingStep
- date_time_string_
: MascotXMLHandler
- datetime_
: ExperimentalSettings
, ExperimentalSettingsVisualizer
- db
: ProteinIdentification::SearchParameters
- db_
: InspectInfile
, MascotInfile
, MzTab::CMMzTabStream
, MzTab::IDMzTabStream
, ProteinIdentificationVisualizer
, SqliteConnector
- db_map_
: MzIdentMLDOMHandler
- db_mapping_file_
: AccurateMassSearchEngine
- db_mass_
: AccurateMassSearchResult
- db_pos_length_
: InspectOutfile
- db_search_params_
: IdentificationData
- db_search_steps_
: IdentificationData
- db_sq_map_
: MzIdentMLDOMHandler
- db_struct_file_
: AccurateMassSearchEngine
- db_version
: ProteinIdentification::SearchParameters
- db_version_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
, ProteinIdentificationVisualizer
- dbflags
: CsiFingerIdMzTabWriter::CsiAdapterHit
- debug_
: FeatureFinderAlgorithmPicked
, MapAlignmentAlgorithmSpectrumAlignment
- debug_im_file_
: SwathMapMassCorrection
- debug_level_
: FeatureFinderAlgorithmMetaboIdent
, FeatureFinderIdentificationAlgorithm
, SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects
, TOPPBase
- debug_lvl_
: BayesianProteinInferenceAlgorithm
- debug_mz_file_
: SwathMapMassCorrection
- debug_streams_
: LogConfigHandler
- debugmatrix_
: MapAlignmentAlgorithmSpectrumAlignment
- debugscorematrix_
: MapAlignmentAlgorithmSpectrumAlignment
- debugtraceback_
: MapAlignmentAlgorithmSpectrumAlignment
- decoded_char
: MzMLHandlerHelper::BinaryData
- decoded_double_list_
: MzDataHandler
- decoded_list_
: MzDataHandler
- decoder_
: Base64
- decomp_
: MassDecomposition
- decomp_cache_
: CompNovoIdentificationBase
- decomp_weights_precision_
: CompNovoIdentificationBase
- decomposer_
: RealMassDecomposer
, MassDecompositionAlgorithm
- decon_ms1_mz_tol_
: SwathQC
- deconvolution_
: PeakPickerCWT
- decoy
: SiriusFragmentAnnotation::SiriusTargetDecoySpectra
, TransitionTSVFile::TSVTransition
, LightTransition
- decoy_
: OSWPeptidePrecursor
- decoy_compound_ref
: MetaboTargetedTargetDecoy::MetaboTargetDecoyMassMapping
- decoy_counts
: TargetedExperiment::SummaryStatistics
- decoy_file_number
: MetaboTargetedAssay::TargetDecoyGroup
- decoy_index
: MetaboTargetedAssay::TargetDecoyGroup
- decoy_index_
: ConfidenceScoring
- decoy_mz
: MetaboTargetedAssay::TargetDecoyGroup
- decoy_prefix_
: OpenPepXLAlgorithm
, OpenPepXLLFAlgorithm
, PepXMLFile
- decoy_product_masses
: MetaboTargetedTargetDecoy::MetaboTargetDecoyMassMapping
- decoy_rt
: MetaboTargetedAssay::TargetDecoyGroup
- decoy_string_
: XQuestResultXMLHandler
, OpenPepXLAlgorithm
, OpenPepXLLFAlgorithm
, PeptideIndexing
, XFDRAlgorithm
- decoy_type_
: ReactionMonitoringTransition
- decoys_
: SimpleSearchEngineAlgorithm
- DEF_COSINE_SIMILARITY
: TOPPGNPSExport
- DEF_MERGE_BIN_SIZE
: TOPPGNPSExport
- DEF_MSMAP_CACHE
: TOPPGNPSExport
- DEF_PEPT_CUTOFF
: TOPPGNPSExport
- DEF_PREC_MASS_TOL
: TOPPGNPSExport
- DEF_PREC_MASS_TOL_ISPPM
: TOPPGNPSExport
- default_array_length
: MzMLHandler::ChromatogramData
, MzMLHandler::SpectrumData
- default_array_length_
: MzMLHandler
- default_baseloss_
: Ribonucleotide
- DEFAULT_BIN_OFFSET_HIRES
: BinnedSpectrum
- DEFAULT_BIN_OFFSET_LOWRES
: BinnedSpectrum
- DEFAULT_BIN_WIDTH_HIRES
: BinnedSpectrum
- DEFAULT_BIN_WIDTH_LOWRES
: BinnedSpectrum
- default_charge_
: ParentPeakMower
- default_dir_
: ToolsDialog
, TOPPASToolConfigDialog
- default_ms_level_
: DTAFile
- default_nterm_mods_
: XTandemXMLFile
- default_parameters_file_
: XTandemInfile
- default_processing_
: MzMLHandler
- default_scan_regexp
: SpectrumLookup
- default_value
: ParameterInformation
- defaultArrayLength
: Chromatogram
, Spectrum
, OSChromatogram
, OSSpectrum
- defaults_
: DefaultParamHandler
- deisotope_mode_
: OpenPepXLAlgorithm
, OpenPepXLLFAlgorithm
- deisotoping_annotate_charge_
: TargetedSpectraExtractor
- deisotoping_fragment_tolerance_
: TargetedSpectraExtractor
- deisotoping_fragment_unit_
: TargetedSpectraExtractor
- deisotoping_keep_only_deisotoped_
: TargetedSpectraExtractor
- deisotoping_max_charge_
: TargetedSpectraExtractor
- deisotoping_max_isopeaks_
: TargetedSpectraExtractor
- deisotoping_min_charge_
: TargetedSpectraExtractor
- deisotoping_min_isopeaks_
: TargetedSpectraExtractor
- deisotoping_use_deisotoper_
: TargetedSpectraExtractor
- delay_
: AcqusHandler
- delay_in_seconds_
: FileWatcher
- delete_buffer_
: LogStream
- delim_
: MSstatsFile
, TriqlerFile
- delta_cn_weights_
: SequestOutfile
- delta_mass
: MultiplexDeltaMasses::DeltaMass
, MultiplexDeltaMassesGenerator::Label
- delta_mass_weights_
: SequestOutfile
- delta_masses_
: MultiplexDeltaMasses
- delta_masses_list_
: MultiplexDeltaMassesGenerator
- denominator_ref_
: ConsensusFeature::Ratio
- des
: SiriusMSFile::CompoundInfo
- desc_
: TOPPASBase
- description
: ControlledVocabulary::CVTerm
, FASTAFile::FASTAEntry
, ParentMolecule
, IsobaricQuantitationMethod::IsobaricChannelInformation
, ItraqConstants::ChannelInfo
, MultiplexDeltaMassesGenerator::Label
, MzTabMetaData
, MzTabNucleicAcidSectionRow
, MzTabProteinSectionRow
, MzTabSampleMetaData
, MzTabSmallMoleculeSectionRow
, MzTabStudyVariableMetaData
, Param::ParamEntry
, Param::ParamIterator::TraceInfo
, Param::ParamNode
, ParameterInformation
, OSBinaryDataArray
- description_
: ConsensusFeature::Ratio
, FASTAFile
, PepXMLFile::AminoAcidModification
- description_text_
: TOPPASScene
- descriptions_
: ParamXMLHandler
- descriptors
: SvmTheoreticalSpectrumGenerator::DescriptorSet
- detecting_transition
: TransitionTSVFile::TSVTransition
, LightTransition
- detector
: MzTabInstrumentMetaData
- dfs_color_
: TOPPASVertex
- dh_
: AhoCorasickAmbiguous
- dia_byseries_intensity_min_
: DIAScoring
- dia_byseries_ppm_diff_
: DIAScoring
- dia_centroided_
: DIAScoring
, SONARScoring
- dia_extract_window_
: DiaPrescore
, DIAScoring
, SONARScoring
- dia_extraction_ppm_
: DIAScoring
, SONARScoring
- dia_nr_charges_
: DIAScoring
- dia_nr_isotopes_
: DIAScoring
- dia_treewidget_
: DIATreeTab
- dia_widget_
: DataSelectionTabs
- diascoring_
: MRMFeatureFinderScoring
- diatab_controller_
: DataSelectionTabs
- diff_average_mass_
: ResidueModification
- diff_exponent_
: SimplePairFinder
- diff_formula_
: UnimodXMLHandler
, ResidueModification
- diff_intercept_
: SimplePairFinder
- diff_mono_mass_
: ResidueModification
- diff_score
: IDDecoyProbability::Transformation_
- digested_db_
: Contaminants
- digestion_
: IDFilter::DigestionFilter
, IDFilter::PeptideDigestionFilter
- digestion_enzyme
: DBSearchParam
, ProteinIdentification::SearchParameters
- digestion_time_
: Digestion
- digestionenzyme_
: DigestionVisualizer
- digestionPH_
: DigestionVisualizer
- digestiontemperature_
: DigestionVisualizer
- digestiontime_
: DigestionVisualizer
- dilution_factor
: AbsoluteQuantitationStandards::featureConcentration
, AbsoluteQuantitationStandards::runConcentration
- dim_
: FeatureXMLFile
- dimension_name_full_
: Peak2D
- dimension_name_short_
: Peak2D
- dimension_unit_full_
: Peak2D
- dimension_unit_short_
: Peak2D
- dimensionsize_
: DistanceMatrix< Value >
- disable_parsing_
: FeatureXMLFile
- disease
: MzTabSampleMetaData
- dist_
: HistogramWidget
, OptimizePeakDeconvolution
, UniqueIdGenerator
- distance
: BinaryTreeNode
, QTCluster::Neighbor
- distance_
: MinimumDistance
- distance_it_for_cluster_idx_
: GridBasedClustering< Metric >
- distances_
: GridBasedClustering< Metric >
- distribution_
: IsotopeDistribution
- distributions_
: ProductModel< 2 >
- dlg_
: GUIProgressLoggerImpl
- dm_elements_2d_
: TOPPViewBase
- dm_hull_2d_
: TOPPViewBase
- dm_hulls_2d_
: TOPPViewBase
- dm_ident_2d_
: TOPPViewBase
- dm_label_2d_
: TOPPViewBase
- dm_precursors_2d_
: TOPPViewBase
- dm_unassigned_2d_
: TOPPViewBase
- do_p_trim
: IsoSpecTotalProbWrapper
- document_id_
: IdXMLFile
- doi
: Citation
- dotprod_score_dia
: OpenSwath_Scores
- doWrite_
: OpenSwathOSWWriter
, OpenSwathTSVWriter
- dps_
: MSDataWritingConsumer
- drag_start_pos_
: TOPPASTreeView
- draw_group_1d_
: TOPPViewBase
- draw_interesting_MZs_
: Plot1DCanvas
- draw_modes_
: Plot1DCanvas
- drift_time
: TransitionTSVFile::TSVTransition
, LightCompound
- drift_time_
: MSSpectrum
, Precursor
, PeptideCompound
- drift_time_unit_
: MSSpectrum
, Precursor
- drift_window_low_
: Precursor
- drift_window_up_
: Precursor
- DRIFTTIME_NOT_SET
: IMTypes
- dry_run_
: TOPPASScene
- dt_
: DateTime
- dt_model_file_
: DetectabilitySimulation
- dw_
: AcqusHandler