- f -

f : Base64::Reinterpreter32_ , Base64::Reinterpreter64_ , IsotopeWavelet::fi_
f_ : FASTAContainer< TFI_File >
f_cf_ids_ : MzQuantMLHandler
f_f_obj_ : MzQuantMLHandler
f_max_ : PrecursorIonSelectionPreprocessing
factor_ : ParentPeakMower , SpectrumCheapDPCorr
fall : TIC::Result
false_discovery_rate : MzTabMetaData
far_ : Plot3DOpenGLCanvas
fasta_entry : ProteinResolver::ProteinEntry
fatal_streams_ : LogConfigHandler
fdr_threshold : IdentificationSummary::UniqueID
feat_finder_ : FeatureFinderAlgorithmMetaboIdent , FeatureFinderIdentificationAlgorithm
feat_score_ : FeatureHypothesis
feature : AbsoluteQuantitationStandards::featureConcentration , PSLPFormulation::IndexTriple , QTCluster::Element , QTCluster::Neighbor
feature0_charge_ : ChargePair
feature0_index_ : ChargePair
feature1_charge_ : ChargePair
feature1_index_ : ChargePair
feature_ : FeatureEditDialog , FeatureOpenMS , GridFeature
feature_compare_ : FeatureFinderAlgorithmMetaboIdent , FeatureFinderIdentificationAlgorithm
feature_count : FeatureSummary::Result
feature_distance_ : FeatureGroupingAlgorithmKD , QTClusterFinder
feature_filter_ : FeatureFinderAlgorithmMetaboIdent
feature_filter_peptides_ : FeatureFinderIdentificationAlgorithm
feature_filter_quality_ : FeatureFinderIdentificationAlgorithm
feature_id : CsiFingerIdMzTabWriter::CsiAdapterIdentification , SiriusMzTabWriter::SiriusAdapterIdentification
feature_index_ : GridFeature
feature_map_ : FeatureFinderMultiplexAlgorithm , MRMFeature
feature_maps : FeatureMapping::FeatureMappingInfo
feature_maps_ : MSQuantifications::Assay , MSQuantifications , MSSim
feature_max : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
feature_min : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
feature_name_ : AbsoluteQuantitationMethod
features : MSstatsFile::AggregatedConsensusInfo , TriqlerFile::AggregatedConsensusInfo
features_ : FeatureFinderAlgorithm , FeatureFinderAlgorithmMRM , FeatureFinderAlgorithmPicked , KDTreeFeatureMaps , LayerData , MRMFeature , MRMFeatureOpenMS , OSWPeptidePrecursor
ff_ : FeatureFinderAlgorithm , FeatureFinderAlgorithmMRM , FeatureFinderAlgorithmPicked
fid : SiriusMSFile::CompoundInfo
field : DataFilters::DataFilter
file_ : MQEvidence , Bzip2Ifstream , BaseException , HDF5Connector , XMLHandler
file_current_index_ : Bzip2InputStream , GzipInputStream
file_dialog_text_ : LayerAnnotatorBase
file_format_filter_ : InputFile
file_name_ : ListEditorDelegate , TOPPASResource , TOPPASScene
file_origin_to_idx_ : IDMergerAlgorithm
file_path_ : DocumentIdentifier , DocumentIdentifierVisualizer
file_size_ : SourceFile , SourceFileVisualizer
file_stream_ : CSVWriter
file_type_ : DocumentIdentifier , DocumentIdentifierVisualizer , SourceFile , SourceFileVisualizer
filename : ConsensusMap::ColumnHeader , LayerData
filename_ : MQEvidence , CachedmzML , FASTAContainer< TFI_File > , FIAMSScheduler , INIFileEditorWindow , IndexedMzMLHandler , MzMLSqliteHandler , MzMLSqliteSwathHandler
fileName_ : ParamEditorDelegate
filename_ : MSDataSqlConsumer , MzTab::CMMzTabStream , MzTab::IDMzTabStream , OnDiscMSExperiment , OSWFile , ToolsDialog , TOPPASToolConfigDialog , XMLValidator
filename_cached_ : CachedmzML
filenames : TOPPASVertex::VertexRoundPackage
filenames_ : File::TemporaryFiles_ , TOPPASVertex::TOPPASFilenames
files_total_ : TOPPASOutputFileListVertex
files_written_ : TOPPASOutputFileListVertex
fileSize_ : FASTAFile
filestream_ : IndexedMzMLHandler
fill_data_ : PeakFileOptions
filled_ : IDMergerAlgorithm
filter_ : DataFilterDialog
filter_dock_widget_ : TOPPViewBase
filter_list_ : TOPPViewBase
filter_passed : PeptideIndexing::FoundProteinFunctor
filter_rejected : PeptideIndexing::FoundProteinFunctor
filter_threshold_ : PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
filters : LayerData
filters_ : DataFilters , FilterList
final_MS_ : MassAnalyzerVisualizer
final_MS_exponent_ : MassAnalyzer
final_score : ConsensusIDAlgorithm::HitInfo
finalized_ : QTCluster
finder_ : AhoCorasickAmbiguous
fingerid : SiriusAdapterAlgorithm
finished_ : TOPPASVertex
first : ProbablePhosphoSites , TransformationModel::DataPoint
first_ : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
first_column_ : FuzzyStringComparator
first_name_ : ContactPerson
first_row_ : NeedlemanWunsch
first_run_inference_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
firstname_ : ContactPersonVisualizer
fit_data_ : MapAlignmentAlgorithmKD
fit_EMG_ : PeakIntegrator
fitter_emg1D_params_ : EmgScoring
five_prime_ : NASequence
five_prime_gain_ : DigestionEnzymeRNA , RNaseDigestion
fixed_mod : MzIdentMLDOMHandler::ModificationParam , MzTabMetaData
fixed_modification_ : ModificationDefinition
fixed_modifications : ProteinIdentification::SearchParameters
fixed_modifications_ : PepXMLFile , PepXMLFileMascot , PrecursorIonSelectionPreprocessing
fixed_mods : DBSearchParam
fixed_mods_ : ModificationDefinitionsSet , MzTab::CMMzTabStream , MzTab::IDMzTabStream , PrecursorIonSelectionPreprocessing
fixedModNames_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
flag : MapAlignmentAlgorithmSpectrumAlignment::Compare , QcMLFile::QualityParameter
flag_or_filter_ : MRMFeatureFilter
flags : LayerData
flags_ : Annotation1DTextItem , FeatureFinder
flipped : LayerData
flipped_y_axis_ : Plot1DWidget
float_data_arrays_ : MSChromatogram , MSSpectrum , ProteinIdentification::ProteinGroup
floats_32 : MzMLHandlerHelper::BinaryData
floats_64 : MzMLHandlerHelper::BinaryData
flush_after_ : MSDataSqlConsumer
flux_ : HPLC
fmz : SiriusMSFile::CompoundInfo
followUpScan : IsobaricChannelExtractor::PuritySate_
force_constraints_ : FeatureDistance
force_default_mods_ : XTandemInfile
force_invalid_mods_ : TransitionTSVFile
force_maxquant_compatibility_ : PeakFileOptions
force_tpp_compatibility_ : PeakFileOptions
form_version_ : MascotInfile
format : MzTabMSRunMetaData
format_ : SaveImageDialog
formula : AccurateMassSearchEngine::MappingEntry_ , FeatureFinderAlgorithmMetaboIdent::FeatureFinderMetaboIdentCompound , IdentifiedCompound , SiriusMSFile::CompoundInfo , SiriusMzTabWriter::SiriusAdapterHit
formula_ : Adduct , EmpiricalFormula , Residue , ResidueModification , Ribonucleotide
formula_rank : CsiFingerIdMzTabWriter::CsiAdapterHit
forward_ : HiddenMarkovModel
found_adduct_ : AccurateMassSearchResult
found_precursor_charge_ : SpectralMatch
found_precursor_mass_ : SpectralMatch
fraction : ExperimentalDesign::MSFileSectionEntry
fraction_ : MSstatsFile::MSstatsLine_ , MSstatsFile::MSstatsTMTLine_
fraction_counter_ : PrecursorIonSelection
fraction_group : ExperimentalDesign::MSFileSectionEntry
fraction_identifier_ : ExperimentalSettings , ExperimentalSettingsVisualizer
frag_annotations : OPXLDataStructs::CrossLinkSpectrumMatch
frag_charge_ : MSstatsFile::MSstatsLine_
fragment_annotations : SimpleSearchEngineAlgorithm::AnnotatedHit_
fragment_annotations_ : PeptideHit
fragment_charge : TransitionTSVFile::TSVTransition , LightTransition
fragment_ion_ : MSstatsFile::MSstatsLine_
fragment_ion_codes_ : NucleicAcidSearchEngine
fragment_lower_mz_ : XTandemInfile
fragment_mass_error_unit_ : XTandemInfile
fragment_mass_tolerance : DBSearchParam , ProteinIdentification::SearchParameters
fragment_mass_tolerance_ : AScore , CompNovoIdentificationBase , CompNovoIonScoringBase , OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , SimpleSearchEngineAlgorithm , XTandemInfile
fragment_mass_tolerance_ppm : ProteinIdentification::SearchParameters
fragment_mass_tolerance_unit_ : SimpleSearchEngineAlgorithm
fragment_mass_tolerance_unit_ppm_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
fragment_mass_tolerance_xlinks_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
fragment_mass_type_ : XTandemInfile
fragment_modification : TransitionTSVFile::TSVTransition
fragment_mz_error_ : MetaboliteSpectralMatching
fragment_mzdelta : TransitionTSVFile::TSVTransition
fragment_nr : TransitionTSVFile::TSVTransition
fragment_tolerance : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
fragment_tolerance_ppm : DBSearchParam
fragment_tolerance_ppm_ : AScore
fragment_type : TransitionTSVFile::TSVTransition
fragment_window_ : SpectraIDViewTab
fragmentation_method : MzTabMSRunMetaData
fragmenterror_statistics_ : SpectrumAnnotator
frame_size_ : SavitzkyGolayFilter
freq_ : IonDetectorVisualizer
from_ : TOPPASEdge
from_max_to_left_ : IsotopeWaveletTransform< PeakType >
from_max_to_right_ : IsotopeWaveletTransform< PeakType >
front_boxes_ : IsotopeWaveletTransform< PeakType >
fulfilled_ : SemanticValidator
full_id_ : ResidueModification
full_meta_ : MSDataSqlConsumer
full_name : MzTabCVMetaData
full_name_ : ResidueModification
fullname : CV
FullPeptideName : TransitionTSVFile::TSVTransition
function_ : BaseException
fwhm_ : MassTrace
fwhm_bound_ : PeakPickerCWT
fwhm_end_idx_ : MassTrace
fwhm_mz_avg : MassTrace
fwhm_start_idx_ : MassTrace
fwhm_threshold_ : TargetedSpectraExtractor
fwhm_weight_ : TargetedSpectraExtractor