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OpenMS
2.7.0
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- i -
- i
: Base64::Reinterpreter32_
, Base64::Reinterpreter64_
, IsotopeWavelet::fi_
- id
: ChromatogramExtractorAlgorithm::ExtractionCoordinates
, ControlledVocabulary::CVTerm
, ChromatogramMeta
, SpectrumMeta
, IsobaricQuantitationMethod::IsobaricChannelInformation
, ItraqConstants::ChannelInfo
, QcMLFile::Attachment
, QcMLFile::QualityParameter
, Contact
, CV
, Instrument
, PeptideCompound
, Protein
, Publication
, LightCompound
, LightProtein
, OSChromatogramMeta
, OSSpectrumMeta
, Peptide
, Protein
- id_
: MQEvidence
, Compomer
, DocumentIdentifier
, FASTAFile
, Identification
, IdentificationHit
, IDMergerAlgorithm
, IdXMLFile
, MzIdentMLHandler
, OSWProtein
, OSWTransition
, PeptideIdentification
, ProteinIdentification
, QTCluster::BulkData
, ResidueModification
, SpectrumIdentification
- id_data_
: MascotXMLHandler
- id_format
: MzTabMSRunMetaData
- id_identifier_
: ConsensusXMLFile
, FeatureXMLFile
- id_view_widget_
: DataSelectionTabs
- idec
: MzIdentMLDOMHandler::PeptideEvidence
- identification_
: SpectrumSettings
- identification_date_
: ProteinIdentificationVisualizer
- identification_rate
: Ms2IdentificationRate::IdentificationRateData
- identification_threshold_
: PeptideIdentificationVisualizer
, ProteinIdentificationVisualizer
- identifications
: CsiFingerIdMzTabWriter::CsiAdapterRun
, SiriusMzTabWriter::SiriusAdapterRun
- identified
: IDMapper::SpectraIdentificationState
- identified_compound_lookup_
: IdentificationData
- identified_compounds_
: IdentificationData
- identified_molecule_ref
: MoleculeQueryMatch
- identified_oligo_lookup_
: IdentificationData
- identified_oligos_
: IdentificationData
- identified_peptide_lookup_
: IdentificationData
- identified_peptides_
: IdentificationData
- identifier
: FASTAFile::FASTAEntry
, IdentifiedCompound
, MetaboTargetedTargetDecoy::MetaboTargetDecoyMassMapping
, MzTabSmallMoleculeSectionRow
, ProteinResolver::ResolverResult
- identifier_
: Acquisition
, CVMappingRule
, CVReference
, DocumentIdentifierVisualizer
, MascotXMLHandler
, PeptideIdentificationVisualizer
, ProteinIdentificationVisualizer
- identifier_id_
: ConsensusXMLFile
, FeatureXMLFile
- identifier_to_msrunpath
: ProteinIdentification::Mapping
- identifying_transition
: TransitionTSVFile::TSVTransition
, LightTransition
- idrunid_2_idrunindex_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- ids
: FeatureFinderIdentificationAlgorithm::RTRegion
- ids_
: SpectrumLookup
- idview_controller_
: DataSelectionTabs
- idx_
: KDTreeFeatureNode
- idx_feat
: OSWIndexTrace
- idx_pep
: OSWIndexTrace
- idx_prot
: OSWIndexTrace
- idx_trans
: OSWIndexTrace
- ifl_
: TOPPASInputFilesDialog
- ifs_
: CachedmzML
- ignore_adduct_
: FeatureDistance
- ignore_charge_
: FeatureDistance
, IDMapper
- ignore_missed_cleavages_
: IDFilter::DigestionFilter
- ignore_update
: SpectraIDViewTab
- IL_equivalent_
: PeptideIndexing
- ILG
: IsoSpecTotalProbGeneratorWrapper
, IsoSpecTotalProbWrapper
- im
: RawMSSignalSimulation::ContaminantInfo
- im_correction_function_
: SwathMapMassCorrection
- im_delta_score
: OpenSwath_Scores
- im_drift
: OpenSwath_Scores
- im_drift_extra_pcnt_
: OpenSwathScoring
- im_drift_weighted
: OpenSwath_Scores
- im_extra_drift_
: MRMFeatureFinderScoring
- im_extraction_window
: ChromExtractParams
- im_extraction_window_
: SwathMapMassCorrection
- im_ms1_contrast_coelution
: OpenSwath_Scores
- im_ms1_contrast_shape
: OpenSwath_Scores
- im_ms1_delta_score
: OpenSwath_Scores
- im_ms1_sum_contrast_coelution
: OpenSwath_Scores
- im_ms1_sum_contrast_shape
: OpenSwath_Scores
- IM_MS_AXIS_TITLE
: PlotWidget
- IM_ONEKZERO_AXIS_TITLE
: PlotWidget
- im_xcorr_coelution_score
: OpenSwath_Scores
- im_xcorr_shape_score
: OpenSwath_Scores
- in_description_
: FeatureXMLFile
- in_edges_
: TOPPASVertex
- in_ini_section_
: ToolDescriptionHandler
- in_spectrum_list_
: MzMLHandler
- inchi
: CsiFingerIdMzTabWriter::CsiAdapterHit
, IdentifiedCompound
- inchi_key
: MzTabSmallMoleculeSectionRow
- inchi_string_
: SpectralMatch
- inchikey2D
: CsiFingerIdMzTabWriter::CsiAdapterHit
- include_targets_
: TargetedExperiment
- incomplete_line_
: LogStreamBuf
- incorrectly_assigned_fit_gumbel_param_
: PosteriorErrorProbabilityModel
- incorrectly_assigned_fit_param_
: PosteriorErrorProbabilityModel
- ind2prot_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- ind_apex_intensity
: OpenSwath_Ind_Scores
- ind_area_intensity
: OpenSwath_Ind_Scores
- ind_intensity_ratio
: OpenSwath_Ind_Scores
- ind_intensity_score
: OpenSwath_Ind_Scores
- ind_isotope_correlation
: OpenSwath_Ind_Scores
- ind_isotope_overlap
: OpenSwath_Ind_Scores
- ind_log_intensity
: OpenSwath_Ind_Scores
- ind_log_sn_score
: OpenSwath_Ind_Scores
- ind_massdev_score
: OpenSwath_Ind_Scores
- ind_mi_ratio
: OpenSwath_Ind_Scores
- ind_mi_score
: OpenSwath_Ind_Scores
- ind_num_transitions
: OpenSwath_Ind_Scores
- ind_total_area_intensity
: OpenSwath_Ind_Scores
- ind_total_mi
: OpenSwath_Ind_Scores
- ind_transition_names
: OpenSwath_Ind_Scores
- ind_xcorr_coelution_score
: OpenSwath_Ind_Scores
- ind_xcorr_shape_score
: OpenSwath_Ind_Scores
- index
: DeNovoIonScoring::IonScore
, ChromatogramMeta
, SpectrumMeta
, PeakCandidate
, ProteinResolver::ISDGroup
, ProteinResolver::MSDGroup
, ProteinResolver::PeptideEntry
, ProteinResolver::ProteinEntry
, OSChromatogramMeta
, OSSpectrumMeta
- index_
: FeatureFinderDefs::NoSuccessor
, FidHandler
- index_offset_
: IndexedMzMLHandler
- index_to_description_
: MetaInfoRegistry
- index_to_name_
: MetaInfoRegistry
- index_to_unit_
: MetaInfoRegistry
- index_to_value_
: MetaInfo
- indexed_mzml_file_
: OnDiscMSExperiment
- indexed_schema_location_
: MzMLFile
- indices_
: IsotopeWaveletTransform< PeakType >
- indis
: ProteinResolver::ProteinEntry
- indist_prot_grp_to_pep_
: PeptideProteinResolution
- indistinguishable_proteins_
: ProteinIdentification
- individual_intensities_
: AccurateMassSearchResult
- inf_
: SVOutStream
- infile_
: FASTAFile
- infinity
: FeatureDistance
- info_
: SpectrumCheapDPCorr
- info_streams_
: LogConfigHandler
- info_text_
: PythonModuleRequirement
- infty_
: IntegerMassDecomposer< ValueType, DecompositionValueType >
- ini_file_
: ToolsDialog
- ini_location_
: TOPPBase
- init_param_
: GammaDistributionFitter
, GaussFitter
, GumbelDistributionFitter
, GumbelMaxLikelihoodFitter
- init_prob_
: HiddenMarkovModel
- init_size_
: DistanceMatrix< Value >
- initializedMaps_
: SvmTheoreticalSpectrumGenerator
- inlet_type_
: IonSource
, IonSourceVisualizer
- input_1_name_
: FuzzyStringComparator
- input_2_name_
: FuzzyStringComparator
- input_combo_
: ToolsDialog
- input_file_opt
: DataQuery
- input_file_refs
: DataProcessingStep
- input_filename_
: OpenSwathOSWWriter
, OpenSwathTSVWriter
, XTandemInfile
- input_files_
: IdentificationData
- input_line_1_
: FuzzyStringComparator
- input_line_2_
: FuzzyStringComparator
- input_type
: ProteinResolver::ResolverResult
- inside_
: LinearInterpolation< Key, Value >
- inside_0_
: BilinearInterpolation< Key, Value >
- inside_1_
: BilinearInterpolation< Key, Value >
- instance_
: LogConfigHandler
, UniqueIdGenerator
- instance_number_
: TOPPBase
- instance_ptr_
: Factory< FactoryProduct >
- institution_
: ContactPerson
, ContactPersonVisualizer
- instrument
: MzTabMetaData
- instrument_
: ExperimentalSettings
, HPLC
, InspectInfile
, MascotInfile
- instrument_ref
: Configuration
- instrument_settings_
: ChromatogramSettings
, SpectrumSettings
- instruments_
: MzMLHandler
, TargetedExperiment
- instrumentsettings_polarity_
: InstrumentSettingsVisualizer
- instrumentsettings_scan_mode_
: InstrumentSettingsVisualizer
- int_
: PrecursorVisualizer
- int_32_bit_
: PeakFileOptions
- int_coef
: ConfidenceScoring::GLM_
- int_max
: PeakPickerMaxima::PeakCandidate
- int_range_
: RangeManager< D >
- int_scale_
: Plot3DOpenGLCanvas
- int_sum
: OPXLDataStructs::CrossLinkSpectrumMatch
- integer_data_arrays_
: MSChromatogram
, MSSpectrum
, ProteinIdentification::ProteinGroup
- integrated_intensities_
: PeakPickerMRM
- integrated_intensity
: PeakCandidate
- integration_type_
: PeakIntegrator
- INTEGRATION_TYPE_INTENSITYSUM
: PeakIntegrator
- INTEGRATION_TYPE_SIMPSON
: PeakIntegrator
- INTEGRATION_TYPE_TRAPEZOID
: PeakIntegrator
- intens
: FeatureFinderAlgorithmIsotopeWavelet::BoxElement
, IsotopeWaveletTransform< PeakType >::BoxElement
- intensities
: TIC::Result
- intensity
: FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern
, FeatureFinderAlgorithmPickedHelperStructs::Seed
, FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern
, RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_
, MassTraceDetection::Apex
, OpenSwath_Scores
, PeptideHit::PeakAnnotation
, ProteinResolver::MSDGroup
, ProteinResolver::PeptideEntry
, RawMSSignalSimulation::ContaminantInfo
- intensity_
: ChromatogramPeak
, MultiplexSatelliteProfile
, Peak1D
, Peak2D
, TriqlerFile::TriqlerLine_
- INTENSITY_AXIS_TITLE
: PlotWidget
- intensity_bin_boarders
: SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- intensity_bin_values
: SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- intensity_bins_
: FeatureFinderAlgorithmPicked
- intensity_button_group_
: TOPPViewBase
- intensity_cutoff_
: MultiplexFiltering
- intensity_l
: MRMFeatureQC::ComponentGroupQCs
, MRMFeatureQC::ComponentQCs
- intensity_mode_
: PlotCanvas
- intensity_mz_step_
: FeatureFinderAlgorithmPicked
- intensity_percentage_
: FeatureFinderAlgorithmPicked
- intensity_percentage_optional_
: FeatureFinderAlgorithmPicked
- intensity_range_
: FeatureFileOptions
, PeakFileOptions
- intensity_rt_step_
: FeatureFinderAlgorithmPicked
- intensity_scale_
: RawMSSignalSimulation
- intensity_scale_stddev_
: RawMSSignalSimulation
- intensity_threshold_
: FeatureFinderAlgorithmIsotopeWavelet
- intensity_thresholds_
: FeatureFinderAlgorithmPicked
- intensity_type_
: FeatureFinderAlgorithmIsotopeWavelet
- intensity_u
: MRMFeatureQC::ComponentGroupQCs
, MRMFeatureQC::ComponentQCs
- intenstype_
: IsotopeWaveletTransform< PeakType >
- intercept
: ConfidenceScoring::GLM_
- intercept_
: LinearRegression
, TransformationModelLinear
- intermediate_products_
: ReactionMonitoringTransition
- internal_formula_
: Residue
- internal_to_a_monoweight_
: Residue
- internal_to_b_monoweight_
: Residue
- internal_to_c_monoweight_
: Residue
- internal_to_cterm_monoweight_
: Residue
- internal_to_full_monoweight_
: Residue
- internal_to_nterm_monoweight_
: Residue
- internal_to_x_monoweight_
: Residue
- internal_to_y_monoweight_
: Residue
- internal_to_z_monoweight_
: Residue
- interp_
: TransformationModelInterpolated
- interpol_xs_
: IsotopeWaveletTransform< PeakType >
- interpol_ys_
: IsotopeWaveletTransform< PeakType >
- interpolate_precursor_purity_
: IsobaricChannelExtractor
- interpolation_
: InterpolationModel
- interpolation_mode_
: MultiGradient
- interpolation_step_
: Fitter1D
, InterpolationModel
- interpretation_list_
: IncludeExcludeTarget
, TraMLProduct
- ints_32
: MzMLHandlerHelper::BinaryData
- ints_64
: MzMLHandlerHelper::BinaryData
- intsum_alpha
: OPXLDataStructs::CrossLinkSpectrumMatch
- intsum_beta
: OPXLDataStructs::CrossLinkSpectrumMatch
- inv_table_steps_
: IsotopeWavelet
- inventory_
: Factory< FactoryProduct >
, SingletonRegistry
- IOG
: IsoSpecOrderedGeneratorWrapper
- ion_cutoff_percentage_
: SequestInfile
- ion_detectors_
: Instrument
- ion_ladder_visible_
: Plot1DCanvas
- ion_mass_tolerance_
: MascotInfile
- ion_mobility
: ChromatogramExtractorAlgorithm::ExtractionCoordinates
- ion_mode_
: AccurateMassSearchEngine
, MetaboliteSpectralMatching
- ion_optics_
: Instrument
, InstrumentVisualizer
- ion_ratio_feature_name
: MRMFeatureQC::ComponentGroupQCs
- ion_ratio_l
: MRMFeatureQC::ComponentGroupQCs
- ion_ratio_pair_name_1
: MRMFeatureQC::ComponentGroupQCs
- ion_ratio_pair_name_2
: MRMFeatureQC::ComponentGroupQCs
- ion_ratio_u
: MRMFeatureQC::ComponentGroupQCs
- ion_series_weights_
: SequestInfile
- ion_sources_
: Instrument
- ion_types
: SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- ionization
: SiriusMSFile::CompoundInfo
- ionization_method_
: IonSource
, IonSourceVisualizer
- ionization_type_
: IonizationSimulation
- iontype
: Interpretation
- is_absdiff_small_
: FuzzyStringComparator
- is_active_
: ChargePair
, DataFilters
- IS_actual_concentration
: AbsoluteQuantitationStandards::featureConcentration
, AbsoluteQuantitationStandards::runConcentration
- IS_component_name
: AbsoluteQuantitationStandards::runConcentration
- is_decoy
: ParentMolecule
, IDFilter::HasDecoyAnnotation< HitType >
- is_decoy_
: OSWTransition
- is_end_
: AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
, MatchedIterator< CONT_T, TRAIT, CONST_T >
- IS_feature
: AbsoluteQuantitationStandards::featureConcentration
- is_initialized_
: AccurateMassSearchEngine
- is_instantiated_
: ModificationsDB
- is_internal
: ToolDescriptionInternal
- is_inverse_orientation_
: AxisWidget
- is_isotope_1_mono
: CompNovoIonScoringBase::IonScore
- is_log_
: AxisWidget
- is_ms1_shown_
: SpectraIDViewTab
- IS_name_
: AbsoluteQuantitationMethod
- is_number
: FuzzyStringComparator::StreamElement_
- is_openpepxl_
: XQuestResultXMLHandler
- is_prefix
: DecoyHelper::Result
- is_protein_note_
: XTandemXMLFile
- is_protein_terminus_
: PepXMLFile::AminoAcidModification
- is_ready_
: PythonModuleRequirement
- is_repeatable_
: CVMappingTerm
- is_running_
: StopWatch
- is_sorted
: MSSpectrum::Chunk
- is_space
: FuzzyStringComparator::StreamElement_
- is_spectrum_note_
: XTandemXMLFile
- is_status_success_
: FuzzyStringComparator
- is_swapped_
: Plot1DCanvas
- is_variable_
: PepXMLFile::AminoAcidModification
- isd_group
: ProteinResolver::MSDGroup
, ProteinResolver::PeptideEntry
, ProteinResolver::ProteinEntry
- isds
: ProteinResolver::ResolverResult
- iso_
: MassAnalyzerVisualizer
- iso_distrib
: FeatureFinderAlgorithmMetaboIdent::FeatureFinderMetaboIdentCompound
- iso_gen_
: FeatureFinderAlgorithmMetaboIdent
- iso_map_
: TwoDOptimization
- iso_map_iter
: TwoDOptimization::Data
- iso_number_ms2_negative
: IsobaricQuantifierStatistics
- iso_number_reporter_different
: IsobaricQuantifierStatistics
- iso_number_reporter_negative
: IsobaricQuantifierStatistics
- iso_pattern_
: FeatureHypothesis
- iso_score
: SiriusMzTabWriter::SiriusAdapterHit
- iso_similarity_
: AccurateMassSearchEngine
- iso_solution_different_intensity
: IsobaricQuantifierStatistics
- iso_total_intensity_negative
: IsobaricQuantifierStatistics
- isolation_width_
: MassAnalyzer
- isotope
: NucleicAcidSearchEngine::PrecursorInfo
- isotope_correction_enabled_
: IsobaricQuantifier
- isotope_corrections_
: ITRAQLabeler
- isotope_correlation
: OpenSwath_Scores
- isotope_distance_
: ExtendedIsotopeModel
, IsotopeModel
- isotope_distribution_
: IsotopeModel
- isotope_distributions_
: CompNovoIdentificationBase
, CompNovoIonScoringBase
, FeatureFinderAlgorithmPicked
, IsotopeDistributionCache
- isotope_filt_svm_
: FeatureFindingMetabo
- isotope_filtering_model_
: FeatureFindingMetabo
- isotope_label_type_
: MSstatsFile::MSstatsLine_
- isotope_lorentz_fwhm_
: IsotopeModel
- isotope_model_
: TheoreticalSpectrumGenerator
- isotope_overlap
: OpenSwath_Scores
- isotope_pmin_
: FeatureFinderAlgorithmMetaboIdent
, FeatureFinderIdentificationAlgorithm
- isotope_probs_
: FeatureFinderAlgorithmMetaboIdent
, FeatureFinderIdentificationAlgorithm
- isotope_stdev_
: ExtendedIsotopeFitter1D
, ExtendedIsotopeModel
, IsotopeFitter1D
, IsotopeModel
- ISOTOPECORRECTIONS_EIGHTPLEX
: ItraqConstants
- ISOTOPECORRECTIONS_FOURPLEX
: ItraqConstants
- ISOTOPECORRECTIONS_TMT_SIXPLEX
: ItraqConstants
- isotopes_
: Element
, IMSElement
- isotopes_per_peptide_max_
: FeatureFinderMultiplexAlgorithm
, MultiplexFiltering
- isotopes_per_peptide_min_
: FeatureFinderMultiplexAlgorithm
, MultiplexFiltering
- isotopes_sim_score_
: AccurateMassSearchResult
- it_
: ConsensusXMLFile
- it_ref_
: MatchedIterator< CONT_T, TRAIT, CONST_T >
- it_tgt_
: MatchedIterator< CONT_T, TRAIT, CONST_T >
- item_
: shared_xerces_ptr< T >
, unique_xerces_ptr< T >
- itemenclosed_
: CsvFile
- items
: IDFilter::GetMatchingItems< HitType, Entry >
- items_
: FilterableList
- items_wo_bl_
: FilterableList
- itemseperator_
: CsvFile
- ITG
: IsoSpecThresholdGeneratorWrapper
, IsoSpecThresholdWrapper
- itraq_type_
: ITRAQLabeler