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OpenMS
2.7.0
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- p -
- p
: GammaDistributionFitter::GammaDistributionFitResult
- p_
: MessagePasserFactory< Label >
, ToolDescriptionHandler
- p_cleave
: EnzymaticDigestionLogModel::CleavageModel_
- p_miss
: EnzymaticDigestionLogModel::CleavageModel_
- p_pv_map_
: MzIdentMLDOMHandler
- packages_
: SplineInterpolatedPeaks::Navigator
, SplineInterpolatedPeaks
- painter_
: Plot3DOpenGLCanvas
- pair_min_quality_
: SimplePairFinder
- pairfinder_
: MapAlignmentAlgorithmPoseClustering
- pairfinder_input_
: FeatureGroupingAlgorithmUnlabeled
- param
: ToolExternalDetails
, LayerData
- param_
: DefaultParamHandler
, FeatureXMLFile
, IdXMLFile
, INIFileEditorWindow
, ParamXMLHandler
, TOPPViewPrefDialog
, LocalLinearMap
, MapAlignmentAlgorithmKD
, ParamEditor
, SVMWrapper
, TOPPASToolConfigDialog
, TOPPASToolVertex
, TOPPBase
- param_binsize_
: XFDRAlgorithm
- param_cmdline_
: TOPPBase
- param_common_
: TOPPBase
- param_common_tool_
: TOPPBase
- param_decoy_string_
: XFDRAlgorithm
- param_futures_
: TVToolDiscovery
- param_groups_
: MzMLValidator
, MzQuantMLValidator
- param_inifile_
: TOPPBase
- param_instance_
: TOPPBase
- param_maxborder_
: XFDRAlgorithm
- param_minborder_
: XFDRAlgorithm
- param_mindeltas_
: XFDRAlgorithm
- param_minionsmatched_
: XFDRAlgorithm
- param_minscore_
: XFDRAlgorithm
- PARAM_NAME
: LogConfigHandler
- param_name
: TOPPASToolVertex::IOInfo
- param_no_qvalues_
: XFDRAlgorithm
- param_uniquexl_
: XFDRAlgorithm
- parameter_cvs
: MzIdentMLDOMHandler::SpectrumIdentificationProtocol
- parameter_ups
: MzIdentMLDOMHandler::SpectrumIdentificationProtocol
- parameters_
: IdXMLFile
, ModelDescription< D >
, MzTabParameterList
, TOPPBase
- params
: MRMFeaturePicker::ComponentGroupParams
, MRMFeaturePicker::ComponentParams
- params_
: AcqusHandler
, PepXMLFile
, ToolsDialog
, TransformationModel
, TransformationXMLFile
, TVToolDiscovery
- params_intensity_
: FeatureDistance
- params_mz_
: FeatureDistance
- params_rt_
: FeatureDistance
- parent_matches
: IdentifiedSequence< SeqType >
- parent_molecule_groupings_
: IdentificationData
- parent_molecule_lookup_
: IdentificationData
- parent_molecule_refs
: ParentMoleculeGroup
- parent_molecules_
: IdentificationData
- parentMap
: Pattern< TNeedle, FuzzyAC >
- parents
: ControlledVocabulary::CVTerm
- parse_double_
: StringUtils
- parse_float_
: StringUtils
- parsing_success_
: IndexedMzMLHandler
- partial_sequence_
: SequestInfile
- pass_threshold_
: IdentificationHit
- passatutto
: SiriusAdapterAlgorithm
- path
: ExperimentalDesign::MSFileSectionEntry
, ToolExternalDetails
- path_
: ParamXMLHandler
- path_label_to_assay_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- path_to_file_
: SourceFile
, SourceFileVisualizer
- pattern_tolerance_
: FeatureFinderAlgorithmPicked
- patterns_
: MultiplexFiltering
- pbuf_
: LogStreamBuf
- pe_ev_map_
: MzIdentMLDOMHandler
- peak
: FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern
, FeatureFinderAlgorithmPickedHelperStructs::Seed
, PeakIndex
- peak_annotations
: MoleculeQueryMatch
- peak_apex_intensity
: PeakCandidate
- peak_before_mono_max_ppm_diff_
: DIAScoring
- peak_bound_
: PeakPickerCWT
- peak_bound_ms2_level_
: PeakPickerCWT
- peak_colors_1d
: LayerData
- peak_corr_bound_
: PeakPickerCWT
- peak_count_
: MzDataHandler
, MzXMLHandler::SpectrumData
- peak_depth
: ProbablePhosphoSites
- peak_height_max_
: TargetedSpectraExtractor
- peak_height_min_
: TargetedSpectraExtractor
- peak_idx
: MassTraceDetection::Apex
- peak_integration_
: MRMTransitionGroupPicker
- peak_map_
: LayerData
, MSSim
, SpectrumCheapDPCorr
- peak_mass_tolerance_
: InspectInfile
, SequestInfile
- peak_meta_
: MSDataSqlConsumer
- peak_penstyle_
: Plot1DCanvas
- peak_position_
: Annotation1DPeakItem
- peak_spread_
: TargetedSpectraExtractor::BinnedSpectrumComparator
- peak_tolerance_
: ProteinIdentificationVisualizer
- peak_width_
: FeatureFinderAlgorithmMetaboIdent
, FeatureFinderIdentificationAlgorithm
, PeakPickerIterative
, PeakPickerMRM
- peakcount_
: NLargest
, WindowMower
- peaks
: FeatureFinderAlgorithmPickedHelperStructs::MassTrace
, IsotopeCluster
, OptimizePeakDeconvolution::Data
, OptimizePick::Data
- peaks_
: IMSIsotopeDistribution
- peaks_per_peptide_
: MultiplexIsotopicPeakPattern
- pen_
: Annotations1DContainer
- pen_color_
: TOPPASVertex
- pen_size_max_
: Plot2DCanvas
- pen_size_min_
: Plot2DCanvas
- penalties
: OptimizePeakDeconvolution::Data
, OptimizePick::Data
, TwoDOptimization::Data
- penalties_
: OptimizePeakDeconvolution
, OptimizePick
, TwoDOptimization
- pep_counter_
: MzTab::CMMzTabStream
- pep_hit_
: ConsensusXMLFile
, FeatureXMLFile
, IdXMLFile
, ProtXMLFile
- pep_id_
: ConsensusXMLFile
, FeatureXMLFile
, IdXMLFile
, MzIdentMLDOMHandler
, MzIdentMLHandler
, MzTab::CMMzTabStream
, MzTab::IDMzTabStream
, ProtXMLFile
- pep_ids_
: IdXMLFile
, XQuestResultXMLHandler
- pep_indices
: ConnectedComponent
- pep_map_
: MzIdentMLDOMHandler
- pep_optional_column_names_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- pep_quant_
: PeptideAndProteinQuant
- pep_result_
: IDMergerAlgorithm
- pep_sequences_
: MzIdentMLHandler
- pep_to_indist_prot_grp_
: PeptideProteinResolution
- pep_to_prot
: PeptideIndexing::FoundProteinFunctor
- pepHitVtx_to_run_
: IDBoostGraph
- pepPrior_
: MessagePasserFactory< Label >
- peptide
: RNPxlReportRow
- peptide_
: AASequence
- peptide_abundance_assay
: MzTabPeptideSectionRow
- peptide_abundance_std_error_study_variable
: MzTabPeptideSectionRow
- peptide_abundance_stdev_study_variable
: MzTabPeptideSectionRow
- peptide_abundance_study_variable
: MzTabPeptideSectionRow
- peptide_compare_
: FeatureFinderIdentificationAlgorithm
- peptide_count
: TargetedExperiment::SummaryStatistics
- peptide_data_
: MzTab
- peptide_entries
: ProteinResolver::ResolverResult
- peptide_evidences_
: ConsensusXMLFile
, IdXMLFile
, PeptideHit
- peptide_group_label
: TransitionTSVFile::TSVTransition
, LightCompound
- peptide_group_label_
: Peptide
- peptide_hit
: ProteinResolver::PeptideEntry
- peptide_hit_
: PepXMLFile
- peptide_hit_index
: LayerData
- peptide_hit_user_value_keys_
: MzTab::IDMzTabStream
- peptide_hits_
: XTandemXMLFile
- peptide_id_index
: LayerData
, OPXLDataStructs::CrossLinkSpectrumMatch
- peptide_id_meta_values_
: XQuestResultXMLHandler
- peptide_id_user_value_keys_
: MzTab::IDMzTabStream
- peptide_identification
: ProteinResolver::PeptideEntry
, ProteinResolver::ResolverResult
- peptide_identification_index_
: MascotXMLHandler
- peptide_identifications_
: OMSSAXMLFile
- peptide_ids_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- peptide_intensities_
: IsobaricNormalizer
- peptide_length_mean
: IdentificationSummary::Result
- peptide_map_
: FeatureFinderIdentificationAlgorithm
- peptide_mass
: OPXLDataStructs::AASeqWithMass
- peptide_mass_unit_
: SequestInfile
- peptide_max_size_
: SimpleSearchEngineAlgorithm
- peptide_min_size_
: OpenPepXLAlgorithm
, OpenPepXLLFAlgorithm
, SimpleSearchEngineAlgorithm
- peptide_missed_cleavages_
: SimpleSearchEngineAlgorithm
- peptide_mod_index
: SimpleSearchEngineAlgorithm::AnnotatedHit_
- peptide_motif_
: SimpleSearchEngineAlgorithm
- peptide_quantification_unit
: MzTabMetaData
- peptide_ratios_
: IsobaricNormalizer
- peptide_ref
: LightTransition
- peptide_ref_
: IncludeExcludeTarget
, ReactionMonitoringTransition
- peptide_reference_map_
: TargetedExperiment
- peptide_reference_map_dirty_
: TargetedExperiment
- peptide_search_engine_score
: MzTabMetaData
- peptide_seq
: OPXLDataStructs::AASeqWithMass
- peptide_similarity_
: MultiplexFiltering
- peptide_spectrum_matches
: IdentificationSummary::Result
- peptide_weight
: RNPxlReportRow
- peptidehit_charge_
: PeptideHitVisualizer
- peptidehit_rank_
: PeptideHitVisualizer
- peptidehit_score_
: PeptideHitVisualizer
- peptidehit_sequence_
: PeptideHitVisualizer
- PeptideRefMap_
: MRMFeatureFinderScoring
- PeptideRTMap_
: ChromatogramExtractor
- peptides
: LayerData
, ProteinResolver::ISDGroup
, ProteinResolver::MSDGroup
, ProteinResolver::ProteinEntry
, Protein
- peptides_
: BaseFeature
, OSWProtein
, PepXMLFile
, PepXMLFileMascot
, TargetedExperiment
- PeptideSequence
: TransitionTSVFile::TSVTransition
- peptidoforms
: TransitionTSVFile::TSVTransition
- percentage_
: GradientVisualizer
- percentage_factor_
: PlotCanvas
- percentages_
: Gradient
- percentiles_after
: TransformationDescription::TransformationStatistics
- percentiles_before
: TransformationDescription::TransformationStatistics
- percents
: TransformationDescription::TransformationStatistics
- percTIC
: OPXLDataStructs::CrossLinkSpectrumMatch
- performance_
: SimpleSVM
- permut_
: CompNovoIdentificationBase::Permut
- permute_cache_
: CompNovoIdentificationBase
- pg2prot_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- pg_scores_
: MRMFeature
- ph_
: Digestion
- ph_2_sdat_
: MzIdentMLHandler
- PI
: EmgGradientDescent
- pi_
: MRMTransitionGroupPicker
- picked_peaks
: TwoDOptimization::Data
- picker_
: FIAMSDataProcessor
, MRMTransitionGroupPicker
- pidv_caller_
: PeptideIdentificationVisualizer
, ProteinIdentificationVisualizer
- pint_mono
: SiriusMSFile::CompoundInfo
- pka_
: Residue
- pkb_
: Residue
- pkc_
: Residue
- pmass
: SiriusMSFile::CompoundInfo
- point_indices_
: GridBasedCluster
- points_across_baseline
: PeakIntegrator::PeakShapeMetrics
- points_across_half_height
: PeakIntegrator::PeakShapeMetrics
- polarity_
: HasScanPolarity< SpectrumType >
, InstrumentSettings
, IonSource
, IonSourceVisualizer
- pool_file_
: DocumentIDTagger
- pos
: PenaltyFactors
, PeakPickerMaxima::PeakCandidate
- pos_
: ConsensusXMLFile
, ROCCurve
- pos_adducts_
: AccurateMassSearchEngine
- pos_adducts_fname_
: AccurateMassSearchEngine
- pos_charges_
: Compomer
- pos_col_
: MultiGradient
- pos_max_
: SplineInterpolatedPeaks::Navigator
, SplineInterpolatedPeaks
, SplinePackage
- pos_min_
: SplineInterpolatedPeaks::Navigator
, SplineInterpolatedPeaks
, SplinePackage
- pos_param_pairs_
: MzTabModification
- pos_range_
: RangeManager< D >
- pos_step_width_
: SplinePackage
- pos_step_width_scaling_
: SplineInterpolatedPeaks::Navigator
- position
: CompNovoIonScoringBase::IonScore
, DeNovoIonScoring::IonScore
, EnzymaticDigestionLogModel::BindingSite_
, MzTabModificationMetaData
, OPXLDataStructs::AASeqWithMass
, PeptideIndexing::PeptideProteinMatchInformation
- position_
: AASequence::ConstIterator
, AASequence::Iterator
, Annotation1DCaret
, Annotation1DPeakItem
, Annotation1DTextItem
, ChromatogramPeak
, ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
, AveragePosition< D >
, NASequence::ConstIterator
, NASequence::Iterator
, Peak1D
, Peak2D
- position_weighted_sum_
: AveragePosition< D >
- positions
: OptimizePeakDeconvolution::Data
, OptimizePick::Data
, TwoDOptimization::Data
- possible_charge_states_
: Precursor
- post
: MzIdentMLDOMHandler::PeptideEvidence
, MzTabOligonucleotideSectionRow
, MzTabPSMSectionRow
- post_moves
: MappingParam
- posterior_error_prob
: OSWFile::PercolatorFeature
- potential_adducts_
: FeatureDeconvolution
, MetaboliteFeatureDeconvolution
- potential_cmp
: MetaboTargetedAssay
- potential_rmts
: MetaboTargetedAssay
- potential_target_
: TOPPASScene
- pp_
: PeakPickerMRM
- pp_identifier_2_sil_
: MzIdentMLHandler
- ppm
: ChromExtractParams
- ppm_
: LinearResamplerAlign
, SpectrumAccessQuadMZTransforming
, Tagger
- ppm_error_abs_sum
: OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_alpha
: OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_beta
: OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_linear
: OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_linear_alpha
: OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_linear_beta
: OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_xlinks
: OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_xlinks_alpha
: OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_xlinks_beta
: OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_tolerance_
: GaussFilterAlgorithm
- pre
: MzIdentMLDOMHandler::PeptideEvidence
, MzTabOligonucleotideSectionRow
, MzTabPSMSectionRow
- pre_
: MultiGradient
- pre_int_
: SimpleTSGXLMS
, TheoreticalSpectrumGenerator
, TheoreticalSpectrumGeneratorXLMS
- pre_int_H2O_
: SimpleTSGXLMS
, TheoreticalSpectrumGenerator
, TheoreticalSpectrumGeneratorXLMS
- pre_int_NH3_
: SimpleTSGXLMS
, TheoreticalSpectrumGenerator
, TheoreticalSpectrumGeneratorXLMS
- pre_min_
: MultiGradient
- pre_moves
: MappingParam
- pre_release_identifier
: VersionInfo::VersionDetails
- pre_score
: OPXLDataStructs::CrossLinkSpectrumMatch
- pre_size_
: MultiGradient
- pre_states_
: HMMState
- pre_steps_
: MultiGradient
- precision
: MzMLHandlerHelper::BinaryData
- precision_
: RealMassDecomposer
, Weights
, MzXMLHandler::SpectrumData
- precisions_
: MzDataHandler
- precursor
: TransitionTSVFile::TSVTransition
- precursor_
: ChromatogramSettings
- precursor_adduct_
: SpectralMatch
- precursor_charge
: SpectrumMetaDataLookup::SpectrumMetaData
, TransitionTSVFile::TSVTransition
- precursor_charge_
: MSstatsFile::MSstatsLine_
, MSstatsFile::MSstatsTMTLine_
, SvmTheoreticalSpectrumGenerator
, TriqlerFile::TriqlerLine_
- precursor_chromatogram_map_
: MRMTransitionGroup< ChromatogramType, TransitionType >
- precursor_chromatograms_
: MRMTransitionGroup< ChromatogramType, TransitionType >
- precursor_correction
: OPXLDataStructs::CrossLinkSpectrumMatch
, OPXLDataStructs::ProteinProteinCrossLink
- precursor_correction_steps_
: OpenPepXLAlgorithm
, OpenPepXLLFAlgorithm
- precursor_cv_terms_
: IncludeExcludeTarget
, ReactionMonitoringTransition
- precursor_error_ppm
: NucleicAcidSearchEngine::AnnotatedHit
, OPXLDataStructs::CrossLinkSpectrumMatch
- precursor_feature_map_
: MRMFeature
- precursor_features_
: MRMFeature
, MRMFeatureOpenMS
- precursor_formula
: SiriusMzTabWriter::SiriusAdapterHit
- precursor_int
: MetaboTargetedAssay
- precursor_intensity_
: NucleicAcidSpectrumGenerator
- precursor_isolation_target
: ChromatogramMeta
- precursor_isotopes_
: SimpleSearchEngineAlgorithm
- precursor_lower_mz_
: XTandemInfile
- precursor_mass
: OPXLDataStructs::XLPrecursor
- precursor_mass_error_unit_
: XTandemInfile
- precursor_mass_tolerance
: DBSearchParam
, ProteinIdentification::SearchParameters
- precursor_mass_tolerance_
: BinnedSharedPeakCount
, BinnedSpectralContrastAngle
, BinnedSumAgreeingIntensities
, CompNovoIdentificationCID
, InspectInfile
, MascotInfile
, OpenPepXLAlgorithm
, OpenPepXLLFAlgorithm
, SequestInfile
, SimpleSearchEngineAlgorithm
- precursor_mass_tolerance_minus_
: XTandemInfile
- precursor_mass_tolerance_plus_
: XTandemInfile
- precursor_mass_tolerance_ppm
: ProteinIdentification::SearchParameters
- precursor_mass_tolerance_unit_
: SimpleSearchEngineAlgorithm
- precursor_mass_tolerance_unit_ppm_
: OpenPepXLAlgorithm
, OpenPepXLLFAlgorithm
- precursor_mass_type_
: XTandemInfile
- precursor_max_charge_
: SimpleSearchEngineAlgorithm
- precursor_min_charge_
: SimpleSearchEngineAlgorithm
- precursor_mz
: MetaboTargetedAssay
, SpectrumMetaDataLookup::SpectrumMetaData
, LightTransition
- precursor_mz_
: IncludeExcludeTarget
, OSWPeptidePrecursor
, ReactionMonitoringTransition
- precursor_mz_error_
: MetaboliteSpectralMatching
- precursor_mz_selected_ion_
: PeakFileOptions
- precursor_ref
: NucleicAcidSearchEngine::AnnotatedHit
- precursor_residual_peak_count
: OPXLDataStructs::CrossLinkSpectrumMatch
- precursor_rt
: SpectrumMetaDataLookup::SpectrumMetaData
- precursor_signal_proportion
: OPXLDataStructs::CrossLinkSpectrumMatch
- precursor_statistics_
: SpectrumAnnotator
- precursor_target_intensity
: OPXLDataStructs::CrossLinkSpectrumMatch
- precursor_target_peak_count
: OPXLDataStructs::CrossLinkSpectrumMatch
- precursor_tol_
: MRMMapping
- precursor_tolerance
: MzIdentMLDOMHandler::SpectrumIdentificationProtocol
- precursor_tolerance_
: ProteinIdentificationVisualizer
- precursor_tolerance_ppm
: DBSearchParam
- precursor_total_intensity
: OPXLDataStructs::CrossLinkSpectrumMatch
- precursors_
: BinnedSpectrum
, SpectrumSettings
- precursorScan
: IsobaricChannelExtractor::PuritySate_
- prediction_
: IncludeExcludeTarget
, ReactionMonitoringTransition
- predictor_names_
: SimpleSVM
- preferred_fixed_modifications_
: PepXMLFile
- preferred_variable_modifications_
: PepXMLFile
- prefix
: FuzzyStringComparator::PrefixInfo_
, LogStreamBuf::StreamStruct
- prefix_
: PeptideIndexing
- prefix_fraction
: SimpleSearchEngineAlgorithm::AnnotatedHit_
- prefix_whitespaces
: FuzzyStringComparator::PrefixInfo_
- preprocessing
: SiriusAdapterAlgorithm
- preprocessing_tech
: LPWrapper::SolverParam
- pressure_
: HPLC
- previous_rt_
: MSDataAggregatingConsumer
- previous_seq_
: XTandemXMLFile
- primary_files
: DataProcessingStep
- primary_id_
: SpectralMatch
- print_debug_
: EmgGradientDescent
- print_duplicate_references_
: SequestInfile
- prm_
: OpenSwathWorkflowBase
- pro_id_
: MzIdentMLDOMHandler
, MzIdentMLHandler
- probabilities
: SimpleSVM::Prediction
- probabilities_
: PSProteinInference
- probability
: ProteinIdentification::ProteinGroup
- proc
: TOPPASScene::TOPPProcess
- processing_
: MzMLHandler
- processing_actions_
: DataProcessing
- processing_softwares_
: IdentificationData
- processing_step_opt
: AppliedProcessingStep
- processing_steps_
: IdentificationData
- prod_
: IsotopeWaveletTransform< PeakType >
- product
: TransitionTSVFile::TSVTransition
- product_
: ChromatogramSettings
, ReactionMonitoringTransition
- product_cv_terms_
: IncludeExcludeTarget
- product_isolation_target
: ChromatogramMeta
- product_mz
: LightTransition
- product_mz_
: IncludeExcludeTarget
, OSWTransition
, ProductVisualizer
- product_tol_
: MRMMapping
- product_window_low_
: ProductVisualizer
- product_window_up_
: ProductVisualizer
- products_
: SpectrumSettings
- prog_log_
: FeatureFinderIdentificationAlgorithm
, FeatureFinderMultiplexAlgorithm
- progress_
: ConsensusXMLFile
, FeatureFinderMultiplexAlgorithm
, FeatureGroupingAlgorithmKD
, QcMLFile
- progress_counter_
: FeatureFinderAlgorithmIsotopeWavelet
- project
: SiriusAdapterAlgorithm
- projection_box_
: Plot2DWidget
- projection_horz_
: Plot2DWidget
- projection_max_
: Plot2DWidget
- projection_mz_
: Plot2DCanvas
- projection_peaks_
: Plot2DWidget
- projection_rt_
: Plot2DCanvas
- projection_sum_
: Plot2DWidget
- projection_vert_
: Plot2DWidget
- projections_2d_
: TOPPViewBase
- projections_auto_
: Plot2DWidget
- projections_timer_
: Plot2DWidget
- properties_B_
: GridBasedCluster
- property_A_
: GridBasedCluster
- prot_acc
: PSLPFormulation::IndexTriple
- prot_acc_to_indist_prot_grp_
: PeptideProteinResolution
- prot_grp_indices
: ConnectedComponent
- prot_hit_
: ConsensusXMLFile
, FeatureXMLFile
, IdXMLFile
- prot_id_
: ConsensusXMLFile
, FeatureXMLFile
, IdXMLFile
, PepXMLFile
, ProtXMLFile
- prot_id_counter_
: PrecursorIonSelection
- prot_id_in_run_
: IdXMLFile
- prot_ids_
: IdXMLFile
, XQuestResultXMLHandler
, MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- prot_masses_
: PrecursorIonSelectionPreprocessing
- prot_peptide_seq_map_
: PrecursorIonSelectionPreprocessing
- prot_quant_
: PeptideAndProteinQuant
- prot_result_
: IDMergerAlgorithm
- protein_
: AhoCorasickAmbiguous
- protein_abundance_assay
: MzTabProteinSectionRow
- protein_abundance_std_error_study_variable
: MzTabProteinSectionRow
- protein_abundance_stdev_study_variable
: MzTabProteinSectionRow
- protein_abundance_study_variable
: MzTabProteinSectionRow
- protein_count
: TargetedExperiment::SummaryStatistics
- protein_data_
: MzTab
, ProteinResolver
- protein_entries
: ProteinResolver::ResolverResult
- protein_group_
: ProtXMLFile
- protein_groups_
: ProteinIdentification
- protein_hit_scores_mean
: IdentificationSummary::Result
- protein_hit_user_value_keys_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- protein_hits_
: ProteinIdentification
, XTandemXMLFile
- protein_id_
: MQEvidence
- protein_identification_
: MascotXMLHandler
, XTandemXMLFile
- protein_identifications_
: ConsensusMap
, ExperimentalSettings
, FeatureMap
- protein_index
: PeptideIndexing::PeptideProteinMatchInformation
- protein_mass_filter_
: SequestInfile
- protein_name_length_
: InspectOutfile
- protein_quantification_unit
: MzTabMetaData
- protein_reference_map_
: TargetedExperiment
- protein_reference_map_dirty_
: TargetedExperiment
- protein_refs
: Peptide
, LightCompound
- protein_score_type_
: ProteinIdentification
- protein_search_engine_score
: MzTabMetaData
- protein_significance_threshold_
: ProteinIdentification
- protein_type
: ProteinResolver::ProteinEntry
- protein_uids_
: XTandemXMLFile
- proteinhit_accession_
: ProteinHitVisualizer
- proteinhit_rank_
: ProteinHitVisualizer
- proteinhit_score_
: ProteinHitVisualizer
- proteinhit_sequence_
: ProteinHitVisualizer
- proteinid_to_accession_
: ConsensusXMLFile
, FeatureXMLFile
, IdXMLFile
- ProteinName
: TransitionTSVFile::TSVTransition
- proteins
: ProteinResolver::ISDGroup
, ProteinResolver::MSDGroup
, ProteinResolver::PeptideEntry
, LightTargetedExperiment
, TargetedExperiment
- proteins_
: OSWData
, PepXMLFile
, TargetedExperiment
- protIDs_
: IDBoostGraph
- prt_group_id_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- prt_hit_id_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- prt_indistgroup_id_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- prt_optional_column_names_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- prt_run_id_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- PRT_STATE_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- pseudo_counts_
: HiddenMarkovModel
- psi_
: IsotopeWaveletTransform< PeakType >
- psi_id_
: DigestionEnzymeProtein
- psi_mod_accession_
: ResidueModification
- psm_count
: PeptideAndProteinQuant::PeptideData
, PeptideAndProteinQuant::ProteinData
- psm_counts
: PeptideAndProteinQuant::PeptideData
, PeptideAndProteinQuant::ProteinData
- psm_data_
: MzTab
- PSM_ID
: MzTabPSMSectionRow
- psm_id_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- psm_optional_column_names_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- psm_search_engine_score
: MzTabMetaData
- pt_prot_map_
: PrecursorIonSelectionPreprocessing
- ptm_file_
: PepNovoInfile
- ptm_informations_
: PTMXMLHandler
- PTMname_residues_mass_type_
: InspectInfile
, SequestInfile
- ptr_
: BaseVisualizer< ObjectType >
- pubchemids
: CsiFingerIdMzTabWriter::CsiAdapterHit
- publication
: MzTabMetaData
- publications_
: TargetedExperiment
- pv_db_map_
: MzIdentMLDOMHandler
- pw_filtering_
: ElutionPeakDetection