- t -

t : RANSACParam
t_star_ : LinearRegression
tab_bar_ : TOPPASBase , TOPPViewBase
tab_width_ : FuzzyStringComparator
table_steps_ : IsotopeWavelet
table_widget_ : SpectraIdentificationViewWidget
tableRows : QcMLFile::Attachment
tag_ : CVMappingFile , MascotXMLHandler , MzIdentMLHandler , MzQuantMLHandler , PTMXMLHandler , ToolDescriptionHandler , TraMLHandler , UnimodXMLHandler , OMSSAXMLFile , QcMLFile , XTandemXMLFile
tag_count_ : InspectInfile
taggingmass_shift_ : TaggingVisualizer
taggingvariant_ : TaggingVisualizer
tags : Param::ParamEntry , ParameterInformation
tags_open_ : MascotXMLHandler
tailing_factor : PeakIntegrator::PeakShapeMetrics
target : FileMapping , LogStreamBuf::StreamStruct
target_ : ListUtils::DoubleTolerancePredicate_
target_in_param_ : TOPPASEdge
target_input_param_indices_ : TOPPASIOMappingDialog
target_intensity : PrecursorPurity::PurityScores
target_peak_count : PrecursorPurity::PurityScores
targetMzXML : FTPeakDetectController
targets_ : TargetedExperiment
tau_ : EGHFitter1D , EGHModel , EGHTraceFitter
taxid : MzTabNucleicAcidSectionRow , MzTabProteinSectionRow , MzTabSmallMoleculeSectionRow
taxon_ : XTandemInfile
taxonomy : DBSearchParam , ProteinIdentification::SearchParameters
taxonomy_ : MascotInfile , ProteinIdentificationVisualizer
taxonomy_file_ : XTandemInfile
td_ : AcqusHandler , ToolDescriptionHandler
td_vec_ : ToolDescriptionHandler
tde_ : ToolDescriptionHandler
technical_rng_ : SimRandomNumberGenerator
techrepmixture_ : MSstatsFile::MSstatsTMTLine_
temp_ : BaseVisualizer< ObjectType >
temperature_ : Digestion , HPLC
temporary_annotations_ : TOPPViewIdentificationViewBehavior
temporary_files_ : File
term_name_ : CVMappingTerm
term_spec_ : ResidueModification , Ribonucleotide
term_spec_alpha : OPXLDataStructs::ProteinProteinCrossLink
term_spec_beta : OPXLDataStructs::ProteinProteinCrossLink
term_specs_ : UnimodXMLHandler
terminal_series_match_ratio_ : SpectrumAnnotator
terminus : PepXMLFile::AminoAcidModification
terms_ : ControlledVocabulary
test_mode_ : TOPPBase
text_ : Annotation1DItem
text_box_content_ : Spectrum1DCanvas
text_fail : ToolExternalDetails
text_finish : ToolExternalDetails
text_startup : ToolExternalDetails
tgt_begin_ : MatchedIterator< CONT_T, TRAIT, CONST_T >
tgt_end_ : MatchedIterator< CONT_T, TRAIT, CONST_T >
th_ : BernNorm
THEO_MZ : MS2Info
theoretical_int : FeatureFinderAlgorithmPickedHelperStructs::MassTrace
theoretical_mass : Compound
theoretical_mz : FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern
theoretical_mz_ : AccurateMassSearchResult
theoretical_pattern : FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern
THREADED_RANDOM_NUMBER_POOL_SIZE_ : RawMSSignalSimulation
threaded_random_numbers_ : RawMSSignalSimulation
threaded_random_numbers_index_ : RawMSSignalSimulation
threads_active_ : TOPPASScene
threads_outer_loop_ : OpenSwathWorkflowBase
three_letter_code_ : Residue
three_prime_ : NASequence
three_prime_gain_ : DigestionEnzymeRNA , RNaseDigestion
thresh_p_ : MassExplainer
threshold_ : ClusterHierarchical , MapAlignmentAlgorithmSpectrumAlignment , ThresholdMower
threshold_cvs : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
threshold_ups : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
TIC : MorpheusScore::Result
tic_weight_ : TargetedSpectraExtractor
tick_level_ : AxisWidget
ticks_ : Annotation1DDistanceItem
time_limit : LPWrapper::SolverParam
timeout_ : MascotRemoteQuery
timepoint_vali_ : GradientVisualizer
timepoints_ : GradientVisualizer
timers_ : FileWatcher
times_ : Gradient
timestamp : LogStreamBuf::LogCacheStruct
tissue : MzTabSampleMetaData
title : Citation , MzTabMetaData
tmp_boxes_ : IsotopeWaveletTransform< PeakType >
tmp_dir_ : SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects
tmp_ms_file_ : SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects
tmp_neighbors_ : QTCluster
tmp_out_dir_ : SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects
tmp_path_ : TOPPASBase , TOPPASScene , TOPPASToolVertex
to_ : MascotRemoteQuery , TOPPASEdge
TOF_ : MassAnalyzerVisualizer
TOF_total_path_length_ : MassAnalyzer
tol_ : MatchedIterator< CONT_T, TRAIT, CONST_T >
tolerance : EqualInTolerance< CompareType >
tolerance_ : ListUtils::DoubleTolerancePredicate_
tolerance_mz_ : TwoDOptimization
tolerance_stdev_box_ : Fitter1D
toleranceMZ_ : SuperHirnParameters
too_few_peptides : PeptideAndProteinQuant::Statistics
tool_bar_ : TOPPASBase , TOPPViewBase
tool_bar_1d_ : TOPPViewBase
tool_bar_2d_cons_ : TOPPViewBase
tool_bar_2d_feat_ : TOPPViewBase
tool_bar_2d_ident_ : TOPPViewBase
tool_bar_2d_peak_ : TOPPViewBase
tool_desc_ : ToolsDialog
tool_description_ : TOPPBase
tool_name_ : TOPPASToolConfigDialog , TOPPBase
tool_ready_ : TOPPASToolVertex
tool_type_ : TOPPASToolConfigDialog
toolname_ : DocumentIDTagger
tools_combo_ : ToolsDialog
tools_external_ : ToolHandler
tools_external_loaded_ : ToolHandler
tools_internal_ : ToolHandler
tools_internal_loaded_ : ToolHandler
tools_tree_view_ : TOPPASBase
TOP_MARGIN : Spectrum1DCanvas
top_matches_to_report_ : TargetedSpectraExtractor
top_n_hits_ : SiriusAdapterAlgorithm
topNmatch_fragmenterrors_ : SpectrumAnnotator
topo_nr_ : TOPPASVertex
topo_sort_marked_ : TOPPASVertex
topp_ : TOPPViewBase
topp_ini_file_ : TOPPBase
topp_processes_queue_ : TOPPASScene
total_abundances : PeptideAndProteinQuant::PeptideData , PeptideAndProteinQuant::ProteinData
total_current : OPXLDataStructs::CrossLinkSpectrumMatch
total_features : PeptideAndProteinQuant::Statistics
total_gradient_time_ : RTSimulation
total_intensity : PrecursorPurity::PurityScores
total_intensity_ : FeatureFindingMetabo
total_nr_peaks : TwoDOptimization::Data
total_peak_area : SHFeature
total_peptides : PeptideAndProteinQuant::Statistics
total_size_ : MSExperiment
total_weight_reciprocal_ : FeatureDistance
total_width : PeakIntegrator::PeakShapeMetrics
total_xic : OpenSwath_Scores
TR : MS1Signal , MS2ConsensusSpectrum , MS2Fragment , MS2Info , MSPeak , SHFeature
tr_ : CentroidPeak
TR_APEX : SHFeature
TR_END : SHFeature
tr_gr_id_ : MRMTransitionGroup< ChromatogramType, TransitionType >
TR_START : SHFeature
tr_table : ToolExternalDetails
trace_ : Param::ParamIterator
trace_peaks_ : MassTrace
trace_termination_criterion_ : MassTraceDetection
trace_termination_outliers_ : MassTraceDetection
trace_tolerance_ : FeatureFinderAlgorithmPicked
traces_ptr : TraceFitter::ModelData
trafo_external_ : FeatureFinderIdentificationAlgorithm
train_count_trans_all_ : HiddenMarkovModel
train_emission_prob_ : HiddenMarkovModel
trained_trans_ : HiddenMarkovModel
training_data_ : SVMWrapper
training_problem_ : SVMWrapper
training_set_ : SVMWrapper
training_steps_count_ : HiddenMarkovModel
trans_ : HiddenMarkovModel
trans_intens_ : IsotopeWaveletTransform< PeakType >::TransSpectrum
trans_x_ : Spectrum3DOpenGLCanvas
trans_y_ : Spectrum3DOpenGLCanvas
transformation_model_ : AbsoluteQuantitationMethod
transformation_model_params_ : AbsoluteQuantitationMethod
transformations_ : MapAlignmentAlgorithmKD
transition_flags_ : ReactionMonitoringTransition
transition_map_ : ConfidenceScoring , MRMTransitionGroup< ChromatogramType, TransitionType >
transition_name : TransitionTSVFile::TSVTransition , LightTransition
transition_quality_score : MetaboTargetedAssay
transitions : LightTargetedExperiment , Peptide
transitions_ : MRMTransitionGroup< ChromatogramType, TransitionType > , TargetedExperiment
traversed : ProteinResolver::PeptideEntry , ProteinResolver::ProteinEntry
trCoord_ : BackgroundIntensityBin
treatmentcomment_ : DigestionVisualizer , ModificationVisualizer , TaggingVisualizer
treatments_ : Sample
treatmenttype_ : DigestionVisualizer , ModificationVisualizer , TaggingVisualizer
tree_ : ParamEditor
tree_id_ : PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
tree_timeout_ : SiriusAdapterAlgorithm
treescore : SiriusMzTabWriter::SiriusAdapterHit
treeview_ : MetaDataBrowser
trEnd : MS2Fragment
trgroup_ : TransitionGroupOpenMS< SpectrumT, TransitionT >
trie_db_pos_length_ : InspectOutfile
trie_delimiter_ : InspectOutfile
trim_right_cutoff_ : ExtendedIsotopeModel , IsotopeModel
trimmed_left : FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern
trStart : MS2Fragment
trTol_ : SuperHirnParameters
tryptic_only_ : CompNovoIdentificationBase
tv : TOPPASScene::TOPPProcess
tv_ : TOPPViewIdentificationViewBehavior , TOPPViewSpectraViewBehavior
two_d_optimization_ : PeakPickerCWT
type : LayerData , ParameterInformation , PeakShape , TOPPASToolVertex::IOInfo
type_ : ChromatogramSettings , ListEditorDelegate , ListTable , IonDetector , IonDetectorVisualizer , ListEditor , MassAnalyzer , MassAnalyzerVisualizer , PrecursorIonSelection , ProgressLogger , SampleTreatment , SpectrumSettings , SpectrumSettingsVisualizer , TOPPASToolVertex
typeName_ : ListEditorDelegate
types : ToolDescriptionInternal