- e -

• E_wrt_h() : EmgGradientDescent
• E_wrt_mu() : EmgGradientDescent
• E_wrt_sigma() : EmgGradientDescent
• E_wrt_tau() : EmgGradientDescent
• edgesBegin() : TOPPASScene
• edgesEnd() : TOPPASScene
• edit() : ParamTree
• editCurrentItem() : InputFileList
• editMetadata() : TOPPViewBase
• editParam() : TOPPASToolVertex
• editText() : Annotation1DItem
• EDTAFile() : EDTAFile
• efficient_replace_and_optimise() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
• EGHFitter1D() : EGHFitter1D
• EGHFitterFunctor() : EGHFitter1D::EGHFitterFunctor
• EGHModel() : EGHModel
• EGHTraceFitter() : EGHTraceFitter
• EGHTraceFunctor() : EGHTraceFitter::EGHTraceFunctor
• EgmFitterFunctor() : EmgFitter1D::EgmFitterFunctor
• Element() : Element
• ElementDB() : ElementDB
• ElementNotFound() : ElementNotFound
• elementsFromString_() : FeatureFindingMetabo
• elutionModelFit() : EmgScoring
• ElutionModelFitter() : ElutionModelFitter
• ElutionPeakDetection() : ElutionPeakDetection
• emg_point() : EmgGradientDescent , EmgGradientDescent_friend
• EmgFitter1D() : EmgFitter1D
• EmgGradientDescent() : EmgGradientDescent
• EmgGradientDescent_friend() : EmgGradientDescent_friend
• EmgModel() : EmgModel
• EMGPreProcess_() : PeakIntegrator
• EmgScoring() : EmgScoring
• emitAboutToBeDestroyed() : SignalProvider
• emitChanged() : TOPPASEdge
• emitToolStarted() : TOPPASToolVertex
• EmpiricalFormula() : EmpiricalFormula
• empty() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , AASequence , CalibrationData , ConsensusFeature , ConstRefVector< ContainerT > , CVTermList , CVTermListInterface , FASTAContainer< TFI_File > , FASTAContainer< TFI_Vector > , File , FlagSet< ENUM > , HashGrid< Cluster > , IdentificationData , IMSIsotopeDistribution , LayerStack , BilinearInterpolation< Key, Value > , LinearInterpolation< Key, Value > , MetaInfo , MSExperiment , NASequence , OnDiscMSExperiment , Param , PeptideIdentification , QCBase::SpectraMap , SpectrumLookup
• enable_() : ToolsDialog
• enableAction() : TOPPViewMenu::ActionRequirement_
• enableFeatureNumber() : Plot2DGoToDialog
• enableLogging_() : TOPPBase
• enableTransition() : HiddenMarkovModel
• enableTransition_() : HiddenMarkovModel
• encloses() : _Region< __K, _Val, _SubVal, _Acc, _Cmp > , ConvexHull2D , DBoundingBox< D > , DRange< D > , Feature
• encode() : Base64
• encodeCompositionVector() : LibSVMEncoder
• encodeCompositionVectors() : LibSVMEncoder
• encodeIntegers() : Base64
• encodeLibSVMProblem() : LibSVMEncoder
• encodeLibSVMProblemWithCompositionAndLengthVectors() : LibSVMEncoder
• encodeLibSVMProblemWithCompositionLengthAndWeightVectors() : LibSVMEncoder
• encodeLibSVMProblemWithCompositionVectors() : LibSVMEncoder
• encodeLibSVMProblemWithOligoBorderVectors() : LibSVMEncoder
• encodeLibSVMVector() : LibSVMEncoder
• encodeLibSVMVectors() : LibSVMEncoder
• encodeNP() : MSNumpressCoder
• encodeNPRaw() : MSNumpressCoder
• encodeOligo() : LibSVMEncoder
• encodeOligoBorders() : LibSVMEncoder
• encodeProblemWithOligoBorderVectors() : LibSVMEncoder
• encodeStrings() : Base64
• end() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , AASequence , CalibrationData , ConsensusFeature , ConstRefVector< ContainerT > , DPosition< D, TCoordinateType > , EmpiricalFormula , HashGrid< Cluster > , IsotopeDistribution , IsotopeWaveletTransform< PeakType >::TransSpectrum , MassTrace , MatchedIterator< CONT_T, TRAIT, CONST_T > , Histogram< ValueType, BinSizeType > , MSExperiment , NASequence , Param , RibonucleotideDB , TextFile , XCorrArrayType
• endElement() : CVMappingFile , IdXMLFile , ConsensusXMLHandler , FeatureXMLHandler , MascotXMLHandler , MzDataHandler , MzIdentMLHandler , MzMLHandler , MzQuantMLHandler , MzXMLHandler , ParamXMLHandler , PTMXMLHandler , SemanticValidator , ToolDescriptionHandler , TraMLHandler , UnimodXMLHandler , XMLHandler , XQuestResultXMLHandler , OMSSAXMLFile , PepXMLFile , PepXMLFileMascot , ProtXMLFile , QcMLFile , XTandemXMLFile
• endEnzyme() : DigestionEnzymeDB< DigestionEnzymeType, InstanceType >
• EndParsingSoftly() : XMLHandler::EndParsingSoftly
• endPos() : TOPPASEdge
• endProgress() : GUIProgressLoggerImpl , ProgressLogger , ProgressLogger::ProgressLoggerImpl
• endRun_() : MascotRemoteQuery
• enforceEncoding_() : XMLFile
• EnhancedTabBar() : EnhancedTabBar
• EnhancedTabBarWidgetInterface() : EnhancedTabBarWidgetInterface
• EnhancedWorkspace() : EnhancedWorkspace
• enlarge() : DBoundingBox< D >
• enqueueProcess() : TOPPASScene
• ensureAnnotationsWithinDataRange_() : Plot1DCanvas
• ensureConvexHulls_() : FeatureFinderAlgorithmMetaboIdent , FeatureFinderIdentificationAlgorithm
• ensureLastChar() : String
• ensureMapsAreFilled_() : CachedSwathFileConsumer , FullSwathFileConsumer , MzMLSwathFileConsumer , RegularSwathFileConsumer
• ensureUniqueId() : UniqueIdInterface
• ensureWithinDataRange() : Annotation1DCaret , Annotation1DDistanceItem , Annotation1DItem , Annotation1DPeakItem , Annotation1DTextItem , Annotation1DVerticalLineItem
• enterEvent() : PlotCanvas , TOPPASTreeView , TOPPASWidget
• entirePipelineFinished() : TOPPASScene
• entityClicked() : DIATreeTab
• entityDoubleClicked() : DIATreeTab
• enumerateCrossLinksAndMasses() : OPXLHelper
• enumToName() : MZTrafoModel
• EnzymaticDigestion() : EnzymaticDigestion
• EnzymaticDigestionLogModel() : EnzymaticDigestionLogModel
• equal_() : XMLHandler
• equals() : Map< Key, T >
• erase() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , ConstRefVector< ContainerT > , HashGrid< Cluster > , IMSAlphabet
• erase_exact() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
• eraseMinDistance_() : GridBasedClustering< Metric >
• error() : XMLHandler , XMLValidator
• errorIfAlreadyExists() : ExperimentalDesign
• errorString() : XMLHandler
• escapeXML() : ParamCTDFile
• estimate_() : SignalToNoiseEstimator< Container >
• estimateBackground() : PeakIntegrator
• estimateBackground_() : PeakIntegrator
• EstimateBackgroundInterferences() : MRMFeatureFilter
• EstimateDefaultMRMFeatureQCValues() : MRMFeatureFilter
• estimateEmgParameters() : EmgGradientDescent
• estimateForFragmentFromDNAWeight() : CoarseIsotopePatternGenerator
• estimateForFragmentFromPeptideWeight() : CoarseIsotopePatternGenerator
• estimateForFragmentFromPeptideWeightAndS() : CoarseIsotopePatternGenerator
• estimateForFragmentFromRNAWeight() : CoarseIsotopePatternGenerator
• estimateForFragmentFromWeightAndComp() : CoarseIsotopePatternGenerator
• estimateFromDNAWeight() : CoarseIsotopePatternGenerator
• estimateFromPeptideWeight() : CoarseIsotopePatternGenerator
• estimateFromPeptideWeightAndS() : CoarseIsotopePatternGenerator
• estimateFromRNAWeight() : CoarseIsotopePatternGenerator
• estimateFromWeightAndComp() : CoarseIsotopePatternGenerator , EmpiricalFormula
• estimateFromWeightAndCompAndS() : CoarseIsotopePatternGenerator , EmpiricalFormula
• estimateFWHM() : MassTrace
• estimateNoise() : SignalToNoiseEstimatorMedianRapid
• estimatePeakWidth() : PeakPickerCWT
• EstimatePercRSD() : MRMFeatureFilter
• estimatePrecursorWeight_() : CompNovoIdentification
• estimateRTRange() : OpenSwathHelper
• estimateType() : PeakTypeEstimator
• estimateUntrainedTransitions() : HiddenMarkovModel
• EuclideanSimilarity() : EuclideanSimilarity
• eval() : BSpline2d , CubicSpline2d , GaussFitter , GaussFitter::GaussFitResult , GumbelDistributionFitter::GumbelDistributionFitResult , QuadraticRegression , SplineInterpolatedPeaks::Navigator , SplinePackage , TransformationModelInterpolated::Interpolator
• evaluate() : GridSearch< TupleTypes > , HiddenMarkovModel , MapAlignmentEvaluationAlgorithm , MapAlignmentEvaluationAlgorithmPrecision , MapAlignmentEvaluationAlgorithmRecall , TransformationModel , TransformationModelBSpline , TransformationModelInterpolated , TransformationModelLinear , TransformationModelLowess
• evaluateEGH_() : EGHModel
• event() : QApplicationTOPP
• eventFilter() : ParamEditorDelegate
• examine_edge() : IDBoostGraph::dfs_ccsplit_visitor
• execQuery() : MascotRemoteQuery
• executeBindStatement() : SqliteConnector
• executeStatement() : SqliteConnector
• executionFinished() : TOPPASToolVertex
• exist() : IntegerMassDecomposer< ValueType, DecompositionValueType > , MassDecomposer< ValueType, DecompositionValueType >
• exists() : ControlledVocabulary , File , IDFilter::GetMatchingItems< HitType, Entry > , MetaInfo , MultiGradient , Param
• exists_() : ParamEditorDelegate
• existsRun() : QcMLFile
• existsRunQualityParameter() : QcMLFile
• existsSet() : QcMLFile
• existsSetQualityParameter() : QcMLFile
• expandPrefix_() : LogStreamBuf
• expandToBoundingBox() : ConvexHull2D
• expectList_() : XMLHandler
• ExperimentalDesign() : ExperimentalDesign
• ExperimentalSettings() : ExperimentalSettings
• ExperimentalSettingsVisualizer() : ExperimentalSettingsVisualizer
• exportAsImage() : TOPPASBase
• exportAttachment() : QcMLFile
• exportConsensusMapToMzTab() : MzTab
• exportDBSearchParameters_() : IdentificationDataConverter
• exportEntries() : TableView
• exportFeatureIDs() : IdentificationDataConverter
• exportFeatureMap() : MQEvidence
• exportFeatureMapToMzTab() : MzTab
• exportFeatureMapToMzTabM() : MzTabM
• exportHeader_() : MQEvidence
• exportIdentificationsToMzTab() : MzTab
• exportIDs() : IdentificationDataConverter
• exportIDstats() : QcMLFile
• exportMSRunInformation_() : IdentificationDataConverter
• exportMzTab() : IdentificationDataConverter
• exportMzTab_() : AccurateMassSearchEngine , MetaboliteSpectralMatching
• exportMzTabM_() : AccurateMassSearchEngine
• exportObservationMatchToMzTab_() : IdentificationDataConverter
• exportParentMatches() : IdentificationDataConverter
• exportParentSequenceToMzTab_() : IdentificationDataConverter
• exportPeptideOrOligoToMzTab_() : IdentificationDataConverter
• exportQP() : QcMLFile
• exportQPs() : QcMLFile
• exportRowFromFeature_() : MQEvidence
• exportStepsAndScoresToMzTab_() : IdentificationDataConverter
• extend() : DRange< D > , RangeBase , RangeManager< RangeBases >
• extendBox_() : IsotopeWaveletTransform< PeakType >
• extendClustersY() : GridBasedClustering< Metric >
• ExtendedIsotopeFitter1D() : ExtendedIsotopeFitter1D
• ExtendedIsotopeModel() : ExtendedIsotopeModel
• extendIntensity() : RangeIntensity
• extendMassTrace_() : FeatureFinderAlgorithmPicked
• extendMassTraces_() : FeatureFinderAlgorithmPicked
• extendMobility() : RangeMobility
• extendMZ() : RangeMZ
• extendRT() : RangeRT
• extendUnsafe() : RangeManager< RangeBases >
• ExternalProcess() : ExternalProcess
• ExternalProcessMBox() : ExternalProcessMBox
• extract_columnname_to_columnindex() : SiriusMzTabWriter
• extract_id_() : ChromatogramExtractor
• extract_value_bartlett() : ChromatogramExtractor
• extract_value_tophat() : ChromatogramExtractor , ChromatogramExtractorAlgorithm
• extractAndResolveSiriusAnnotations() : SiriusFragmentAnnotation
• extractAndTransformScores() : PosteriorErrorProbabilityModel
• extractAnnotationFromDecoyFile_() : SiriusFragmentAnnotation
• extractAnnotationFromSiriusFile_() : SiriusFragmentAnnotation
• extractChannels() : IsobaricChannelExtractor
• extractChromatograms() : ChromatogramExtractor , ChromatogramExtractorAlgorithm
• extractComponents_() : AbsoluteQuantitation
• extractCompoundRankingAndFilename_() : SiriusFragmentAnnotation
• extractCompoundRankingAndScore_() : SiriusFragmentAnnotation
• extractConcatMIDsFromSiriusMS_() : SiriusFragmentAnnotation
• extractConcatNativeIDsFromSiriusMS_() : SiriusFragmentAnnotation
• extractCoverageStrings() : TVIdentificationViewController
• extractDateTime_() : XQuestResultXMLHandler
• extractDouble() : StringUtilsHelper
• extractFeatureId() : SiriusMzTabWriter
• extractIndexPairsFromBrackets_() : MzTabFile
• extractIntensityVectors() : ConsensusMapNormalizerAlgorithmQuantile
• extractLabelSet() : MultiplexDeltaMassesGenerator
• extractMarkerIons() : RNPxlMarkerIonExtractor
• extractMetaboTargetedAssay() : MetaboTargetedAssay
• extractMetaboTargetedAssayFragmentAnnotation() : MetaboTargetedAssay
• extractModificationList() : MzTab
• extractNumberOfSubSamples_() : MzTabFile
• extractNumFromAccession_() : SpectraIDViewTab
• extractNumPeptides_() : MzTabFile
• extractNumPeptidesDistinct_() : MzTabFile
• extractNumPeptidesUnambiguous_() : MzTabFile
• extractParamsFromLine_() : MRMFeaturePickerFile
• extractPeaks() : FIAMSDataProcessor
• extractPeptideModifications_() : MzTabFile
• extractPeptideSequences() : IDFilter
• extractPrecursorIsotopePattern_() : SiriusMSFile
• extractProteinAccession_() : MzTabFile
• extractProteinAccessionsSet() : PeptideHit
• extractQueryResults_() : AccurateMassSearchEngine
• extractRunFromLine_() : AbsoluteQuantitationStandardsFile
• extractScanIndex() : SiriusMzTabWriter
• extractScanNumber() : SiriusMzTabWriter , SpectrumLookup
• extractScore_() : DBSuitability
• extractSearchAdapterInfoFromMetaValues_() : DBSuitability
• extractSeqAndRt_() : MapAlignmentAlgorithmTreeGuided
• extractSiriusDecoyAnnotationMapping() : SiriusFragmentAnnotation
• extractSiriusFragmentAnnotationMapping() : SiriusFragmentAnnotation
• extractSpectra() : TargetedSpectraExtractor
• extractSpectrumMSInfo() : SiriusMzTabWriter
• extractTrainingSet() : EmgGradientDescent , EmgGradientDescent_friend
• extractTransformations_() : FeatureFinderAlgorithmMetaboIdent
• extractUnassignedProteins() : IDFilter