References MSDataWritingConsumer::addDataProcessing(), FileTypes::CACHEDMZML, FileTypes::CONSENSUSXML, DataProcessing::CONVERSION_MZML, MapConversion::convert(), ChromatogramTools::convertChromatogramsToSpectra(), ChromatogramTools::convertSpectraToChromatograms(), FileTypes::CSV, FileTypes::DTA2D, FileTypes::EDTA, UniqueIdInterface::ensureUniqueId(), MSNumpressCoder::NumpressConfig::estimate_fixed_point, FileTypes::FEATUREXML, MSExperiment::getChromatograms(), MzXMLFile::getOptions(), MzMLFile::getOptions(), MzMLHandler::getOptions(), FileHandler::getType(), FileHandler::getTypeByFileName(), FileTypes::KROENIK, MSNumpressCoder::NumpressConfig::linear_fp_mass_acc, ConsensusXMLFile::load(), MzMLFile::load(), EDTAFile::load(), FileHandler::loadExperiment(), FileHandler::loadFeatures(), LOG_ERROR, main(), FileTypes::MGF, FileTypes::MZDATA, FileTypes::MZML, FileTypes::MZXML, FileTypes::nameToType(), MSNumpressCoder::NumpressConfig::numpressErrorTolerance, FileTypes::PEPLIST, CachedmzML::readMemdump(), MSNumpressCoder::NumpressConfig::setCompression(), PeakFileOptions::setCompression(), PeakFileOptions::setForceMQCompatability(), PeakFileOptions::setForceTPPCompatability(), ProgressLogger::setLogType(), PeakFileOptions::setNumpressConfigurationIntensity(), PeakFileOptions::setNumpressConfigurationMassTime(), UniqueIdInterface::setUniqueId(), PeakFileOptions::setWriteIndex(), MSExperiment::size(), ConsensusMap::sortByPosition(), String::split(), MascotGenericFile::store(), IBSpectraFile::store(), ConsensusXMLFile::store(), MzXMLFile::store(), MzDataFile::store(), MzMLFile::store(), FeatureXMLFile::store(), EDTAFile::store(), DTA2DFile::store(), DTA2DFile::storeTIC(), MzXMLFile::transform(), MzMLFile::transform(), FileTypes::TSV, FileTypes::typeToName(), FileTypes::UNKNOWN, CachedmzML::writeMemdump(), and CachedmzML::writeMetadata().