Here is a list of all variables with links to the classes they belong to:
- n -
- n : EmgFitter1D::Data, RANSACParam
- n_ : LinearRegressionWithoutIntercept
- n_buffer_ : Bzip2Ifstream, GzipIfstream
- n_decoys_ : ConfidenceScoring
- n_detecting_l : MRMFeatureQC::ComponentGroupQCs
- n_detecting_u : MRMFeatureQC::ComponentGroupQCs
- n_external_features_ : FeatureFinderIdentificationAlgorithm, FFIDAlgoExternalIDHandler
- n_external_peps_ : FeatureFinderIdentificationAlgorithm
- n_external_peptides_ : FFIDAlgoExternalIDHandler
- n_fractions : PeptideAndProteinQuant::Statistics
- n_heavy_l : MRMFeatureQC::ComponentGroupQCs
- n_heavy_u : MRMFeatureQC::ComponentGroupQCs
- n_hits_ : XQuestResultXMLHandler, XQuestResultXMLFile
- n_identifying_l : MRMFeatureQC::ComponentGroupQCs
- n_identifying_u : MRMFeatureQC::ComponentGroupQCs
- n_internal_features_ : FeatureFinderIdentificationAlgorithm, FFIDAlgoExternalIDHandler
- n_internal_peps_ : FeatureFinderIdentificationAlgorithm
- n_isotopes : Biosaur2Algorithm::PeptideFeature
- n_isotopes_ : FeatureFinderAlgorithmMetaboIdent, FeatureFinderIdentificationAlgorithm
- n_light_l : MRMFeatureQC::ComponentGroupQCs
- n_light_u : MRMFeatureQC::ComponentGroupQCs
- n_ms_files : PeptideAndProteinQuant::Statistics
- n_peaks : MorpheusScore::Result
- n_points_ : AbsoluteQuantitationMethod
- n_quantifying_l : MRMFeatureQC::ComponentGroupQCs
- n_quantifying_u : MRMFeatureQC::ComponentGroupQCs
- n_samples : PeptideAndProteinQuant::Statistics
- n_scans : Biosaur2Algorithm::PatternCandidate, Biosaur2Algorithm::PeptideFeature
- n_shared_ : FeatureFinderAlgorithmMetaboIdent
- n_spectra_ : SpectrumLookup
- n_study_variables_ : MzTab::CMMzTabStream
- n_term_gain_ : DigestionEnzymeProtein
- n_term_mod_ : AASequence
- N_TERM_MODIFICATION_INDEX : ModifiedPeptideGenerator
- N_TERMINAL_AA : PeptideEvidence
- N_TERMINAL_POSITION : PeptideEvidence
- n_theoretical_peaks : NuXLAnnotatedHit
- n_transitions_ : ConfidenceScoring
- n_transitions_l : MRMFeatureQC::ComponentGroupQCs
- n_transitions_u : MRMFeatureQC::ComponentGroupQCs
- NA : NuXLReportRow
- NA_adduct_amb_index : NuXLAnnotatedHit
- NA_mod_index : NuXLAnnotatedHit
- na_string_ : MSstatsFile, TriqlerFile
- NA_weight : NuXLReportRow
- name : ControlledVocabulary::CVTerm, CVTerm::Unit, DecoyHelper::Result, FalseDiscoveryRate::DecoyStringHelper::Result, IdentifiedCompound, InputFile, MzIdentMLDOMHandler::AnalysisSoftware, MzIdentMLDOMHandler::DatabaseInput, SemanticValidator::CVTerm, ToolDescriptionInternal, IsobaricQuantitationMethod::IsobaricChannelInformation, ItraqConstants::ChannelInfo, MzTabContactMetaData, MzTabInstrumentMetaData, MzTabMAssayMetaData, MzTabMStudyVariableMetaData, NuXLFragmentAdductDefinition, OpenSearchModificationAnalysis::ModificationSummary, Param::ParamEntry, Param::ParamIterator::TraceInfo, Param::ParamNode, ParameterInformation, QcMLFile::Attachment, QcMLFile::QualityParameter, RangeStatsType
- name_ : AdductInfo, Contaminants, ControlledVocabulary, CVReference, CVTerm, DigestionEnzyme, Element, BaseException, FeatureFinderAlgorithmMetaboIdent::FeatureFinderMetaboIdentCompound, FeatureSummary, IdentificationSummary, IMSElement, IncludeExcludeTarget, Instrument, InstrumentVisualizer, IdentificationHit, PTMXMLHandler, ItraqEightPlexQuantitationMethod, ItraqFourPlexQuantitationMethod, LayerDataBase, MetaInfoDescription, ModelDescription< D >, Ms2IdentificationRate, Ms2SpectrumStats, MSChromatogram, MSSpectrum, MzTabParameter, QcMLFile, ReactionMonitoringTransition, Residue, ResidueModification, Ribonucleotide, RTAlignment, Sample, Software, SpectrumCount, TIC, TMTEighteenPlexQuantitationMethod, TMTElevenPlexQuantitationMethod, TMTSixPlexQuantitationMethod, TMTSixteenPlexQuantitationMethod, TMTTenPlexQuantitationMethod, ToolInfo, TOPPASToolVertex
- name_att_ : SemanticValidator
- name_of_file_ : SourceFile, SourceFileVisualizer
- name_suffix_ : LayerDataBase
- name_to_counter_map_ : StreamHandler
- name_to_index_ : MetaInfoRegistry
- name_to_stream_map_ : StreamHandler
- name_to_type_map_ : StreamHandler
- names_ : ElementDB, QcMLFile
- names_of_missing_decoy : PeptideIndexing
- names_of_modeltype : MZTrafoModel
- names_of_OriginAnnotationFormat : IDRipper
- names_of_oswlevel : OSWFile
- names_of_quantmethod : MassTrace
- names_of_requires : QCBase
- names_of_residuetype : Residue
- names_of_toleranceUnit : QCBase
- names_of_unmatched : PeptideIndexing
- NamesOfAcquisitionMode : IonDetector
- NamesOfActivationMethod : Precursor
- NamesOfActivationMethodShort : Precursor
- NamesOfAnalyzerType : MassAnalyzer
- NamesOfAnnotationState : BaseFeature
- NamesOfChecksumType : SourceFile
- NamesOfDataType : DataValue
- NamesOfDerivatizationAgent : IsotopeLabelingMDVs
- NamesOfInletType : IonSource
- NamesOfIonizationMethod : IonSource
- NamesOfIonOpticsType : Instrument
- NamesOfLabelType : LayerDataDefs
- NamesOfMassIntensityType : IsotopeLabelingMDVs
- NamesOfNumpressCompression : MSNumpressCoder
- NamesOfPeakMassType : ProteinIdentification
- NamesOfPolarity : IonSource
- NamesOfProcessingAction : DataProcessing
- NamesOfReflectronState : MassAnalyzer
- NamesOfResolutionMethod : MassAnalyzer
- NamesOfResolutionType : MassAnalyzer
- NamesOfSampleState : Sample
- NamesOfScanDirection : MassAnalyzer
- NamesOfScanLaw : MassAnalyzer
- NamesOfScanMode : InstrumentSettings
- NamesOfScoringMatrices : NeedlemanWunsch
- NamesOfSpecificity : EnzymaticDigestion
- NamesOfSpectrumType : SpectrumSettings
- NamesOfType : IonDetector
- namesToIds_ : ControlledVocabulary
- nan_ : SVOutStream
- native_id : SpectrumMetaDataLookup::SpectrumMetaData
- native_id_ : ChromatogramSettings, SpectrumSettings, SpectrumSettingsVisualizer
- native_id_accession : SiriusMSFile::AccessionInfo
- native_id_precursor_peak_group_map_ : FLASHDeconvAlgorithm
- native_id_type : SiriusMSFile::AccessionInfo
- native_id_type_ : SourceFile, SourceFileVisualizer
- native_id_type_accession_ : SourceFile
- native_ids : SiriusMSFile::CompoundInfo
- native_ids_id : SiriusMSFile::CompoundInfo
- native_spectrum_name_ : PepXMLFile
- nativeid_to_index_ : QCBase::SpectraMap
- near_ : Plot3DOpenGLCanvas
- nearest_neighbour_index_ : MinimumDistance
- needle_count_ : ACTrie
- needle_index : Hit
- needle_length : Hit
- needs_ : TOPPViewMenu::ActionRequirement_
- neg_ : ROCCurve
- neg_adducts_ : AccurateMassSearchEngine
- neg_adducts_fname_ : AccurateMassSearchEngine
- neg_charges_ : Compomer
- negative_iso_peaks_ : PeakGroup
- negative_mode_ : Biosaur2Algorithm, MetaboliteFeatureDeconvolution
- negative_prior_ : PosteriorErrorProbabilityModel
- neighbor_stats_ : NeighborSeq
- neighbors_ : QTCluster::BulkData
- nesting_level_ : MzXMLHandler
- net_charge_ : Compomer
- network_manager_ : TOPPASBase
- network_reply_ : TOPPASBase
- neutral_loss_average_masses_ : ResidueModification
- neutral_loss_avg_masses_ : UnimodXMLHandler
- neutral_loss_diff_formula_ : UnimodXMLHandler
- neutral_loss_diff_formulas_ : UnimodXMLHandler, ResidueModification
- neutral_loss_mono_masses_ : UnimodXMLHandler, ResidueModification
- neutral_losses_for_ions_ : SequestInfile
- new_code_ : Ribonucleotide
- new_eluent_ : GradientVisualizer
- new_node : _Alloc_base< _Tp, _Alloc >::NoLeakAlloc
- new_score_ : IDScoreSwitcherAlgorithm
- new_score_type_ : IDScoreSwitcherAlgorithm
- new_timepoint_ : GradientVisualizer
- newdescription_ : MetaInfoVisualizer
- newkey_ : MetaInfoVisualizer
- newline_ : SVOutStream
- newRowButton_ : ListEditor
- newvalue_ : MetaInfoVisualizer
- next_consumer_ : MSDataAggregatingConsumer
- next_index_ : MetaInfoRegistry
- next_v : IDBoostGraph::dfs_ccsplit_visitor
- nextrow_ : GradientVisualizer, MetaInfoVisualizer
- nn_threshold : MRMFeatureSelector::SelectorParameters
- no_checks_ : IdentificationData
- no_exceptions : Summary
- no_id : NuXLReportRow
- no_mzml_ : MzCalibration
- no_precursors : IDMapper::PeptideIdentificationListState
- no_rt_error_ : MascotXMLHandler
- NoCleavage : EnzymaticDigestion
- node_offset_ : TOPPASBase
- nodes : Param::ParamNode
- noID_penalty_ : QTClusterFinder
- noise_decoy_weight_ : FLASHDeconvAlgorithm
- noise_for_empty_window_ : SignalToNoiseEstimatorMeanIterative< Container >, SignalToNoiseEstimatorMedian< Container >
- noise_iso_delta_ : SpectralDeconvolution
- noise_threshold_constant_ : MetaboTargetedAssay
- noise_threshold_int_ : MassTraceDetection
- noloss_regex_ : SpectrumAnnotator
- nominal_mass_ : IMSIsotopeDistribution
- norm_factor : FeatureDistance::DistanceParams_
- norm_rt_score : OpenSwath_Scores
- normalization_enabled_ : IsobaricQuantifier
- normalize_xcorr_ : SequestInfile
- normalized_experimental_rt : OpenSwath_Scores
- norms_ : FLASHHelperClasses::PrecalculatedAveragine
- note : TransformationModel::DataPoint
- np_compression : MzMLHandlerHelper::BinaryData, MSNumpressCoder::NumpressConfig
- np_config_fda_ : PeakFileOptions
- np_config_int_ : PeakFileOptions
- np_config_mz_ : PeakFileOptions
- nr_charges_ : DiaPrescore
- nr_children : ACNode
- nr_isotopes_ : DiaPrescore
- nr_iterations_ : PeakPickerIterative
- nr_ms1_spectra_ : CachedSwathFileConsumer, MzMLSwathFileConsumer, SwathQC
- nr_ms2_spectra_ : CachedSwathFileConsumer, MzMLSwathFileConsumer
- nr_partitions_ : QTClusterFinder
- nr_peaks : OpenSwath_Scores
- nr_windows : SignalToNoiseEstimatorMedianRapid::NoiseEstimator
- nrPrefractionationGroups_ : IDBoostGraph
- nt_regex_ : SpectrumAnnotator
- NTerm_loss_formulas_ : Residue
- NTerm_loss_names_ : Residue
- nucleic_acid_data_ : MzTab
- nucleic_acid_search_engine_score : MzTabMetaData
- nucleotide_reading_frame_ : SequestInfile
- nucleotides : NuXLRTPrediction
- num_charge_states : OpenSearchModificationAnalysis::ModificationPattern, OpenSearchModificationAnalysis::ModificationSummary
- num_frags_ : SequestOutfile
- num_interest : DBSuitability::SuitabilityData
- num_iso_peaks_mean : OPXLDataStructs::CrossLinkSpectrumMatch
- num_iso_peaks_mean_linear_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
- num_iso_peaks_mean_linear_beta : OPXLDataStructs::CrossLinkSpectrumMatch
- num_iso_peaks_mean_xlinks_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
- num_iso_peaks_mean_xlinks_beta : OPXLDataStructs::CrossLinkSpectrumMatch
- num_maps_ : KDTreeFeatureMaps, QTCluster::BulkData, QTClusterFinder
- num_matched_ : FragmentIndex::SpectrumMatch
- num_ms2_spectra : Ms2IdentificationRate::IdentificationRateData
- num_oligos_distinct_ms_run : MzTabNucleicAcidSectionRow
- num_oligos_unique_ms_run : MzTabNucleicAcidSectionRow
- num_osms_ms_run : MzTabNucleicAcidSectionRow
- NUM_PARAMS_ : EGHTraceFitter, GaussTraceFitter
- num_peptide_identification : Ms2IdentificationRate::IdentificationRateData
- num_peptides_distinct_ms_run : MzTabProteinSectionRow
- num_peptides_unique_ms_run : MzTabProteinSectionRow
- num_psms_ms_run : MzTabProteinSectionRow
- num_re_ranked : DBSuitability::SuitabilityData
- num_top_db : DBSuitability::SuitabilityData
- num_top_novo : DBSuitability::SuitabilityData
- num_top_novo_corr : DBSuitability::SuitabilityData
- number : FuzzyStringComparator::StreamElement_
- number_ : Sample
- number_ms2_empty : IsobaricQuantifierStatistics
- number_ms2_total : IsobaricQuantifierStatistics
- number_of_datapoints : LayerDataDefs::ProjectionData::Summary
- number_of_max_aa_ : MassDecomposition
- number_of_missed_cleavages_ : XTandemInfile
- number_of_runs_ : ConsensusIDAlgorithm
- number_of_threads_ : XTandemInfile
- number_top_hits_ : OpenPepXLAlgorithm
- numerator_ref_ : ConsensusFeature::Ratio
- numpressErrorTolerance : MSNumpressCoder::NumpressConfig
- numpressFixedPoint : MSNumpressCoder::NumpressConfig
1.9.8 