Here is a list of all variables with links to the classes they belong to:
- d -
- d : RANSACParam
- d_ : CubicSpline2d
- d_intensity_ : NucleicAcidSpectrumGenerator
- dashed_ : Annotation1DVerticalLineItem
- data : AnnotatedMSRun, BinaryDataArray, MzMLHandler::ChromatogramData, MzMLHandler::SpectrumData, OSBinaryDataArray, XCorrArrayType
- data_ : CalibrationData, DataValue, ExposedVector< VectorElement >, FASTAContainer< TFI_Vector >, KDTreeFeatureNode, BilinearInterpolation< Key, Value >, LinearInterpolation< Key, Value >, Matrix< Value >, Mobilogram, ParamValue, QTCluster, TransformationDescription, TransformationXMLFile
- data_bg_ : FASTAContainer< TFI_File >
- data_fg_ : FASTAContainer< TFI_File >
- data_given_ : TransformationModelLinear
- data_id : Observation
- data_processing_ : ChromatogramSettings, ConsensusMap, FeatureMap, MzDataHandler, MzXMLHandler, MetaInfoDescription, SpectrumSettings
- data_range_ : Area< N_DIM >
- data_to_decode_ : MzDataHandler
- data_to_encode_ : MzDataHandler
- data_type : MzMLHandlerHelper::BinaryData
- database : DBSearchParam, MzTabMDatabaseMetaData, MzTabMMetaData, MzTabNucleicAcidSectionRow, MzTabPeptideSectionRow, MzTabProteinSectionRow, MzTabPSMSectionRow, MzTabSmallMoleculeSectionRow
- database_ : SequestInfile
- database_identifier : MzTabMSmallMoleculeEvidenceSectionRow, MzTabMSmallMoleculeSectionRow
- database_location_ : AccurateMassSearchEngine
- database_name_ : AccurateMassSearchEngine
- database_ref : MzIdentMLDOMHandler::DBSequence
- database_version : DBSearchParam, MzTabNucleicAcidSectionRow, MzTabPeptideSectionRow, MzTabProteinSectionRow, MzTabPSMSectionRow, MzTabSmallMoleculeSectionRow
- database_version_ : AccurateMassSearchEngine
- date : MzIdentMLDOMHandler::DatabaseInput
- date_ : MascotXMLHandler, PepXMLFile, ProteinIdentification
- date_time : ProcessingStep
- date_time_string_ : MascotXMLHandler
- datetime_ : ExperimentalSettings, ExperimentalSettingsVisualizer
- db : ProteinIdentification::SearchParameters
- db_ : InspectInfile, OMSFileLoad, OMSFileStore, MzTab::CMMzTabStream, MzTab::IDMzTabStream, ProteinIdentificationVisualizer, SqliteConnector
- db_map_ : MzIdentMLDOMHandler
- db_mapping_file_ : AccurateMassSearchEngine
- db_mass_ : AccurateMassSearchResult
- db_pos_length_ : InspectOutfile
- db_search_params_ : IdentificationData
- db_search_steps_ : IdentificationData
- db_sq_map_ : MzIdentMLDOMHandler
- db_struct_file_ : AccurateMassSearchEngine
- db_version : ProteinIdentification::SearchParameters
- db_version_ : MzTab::CMMzTabStream, MzTab::IDMzTabStream, ProteinIdentificationVisualizer
- debug_ : FeatureFinderAlgorithmPicked
- debug_im_file_ : SwathMapMassCorrection
- debug_level_ : FeatureFinderAlgorithmMetaboIdent, FeatureFinderIdentificationAlgorithm, FFIDAlgoExternalIDHandler, TOPPBase
- debug_lvl_ : BayesianProteinInferenceAlgorithm
- debug_mz_file_ : SwathMapMassCorrection
- debug_streams_ : LogConfigHandler
- decoded_char : MzMLHandlerHelper::BinaryData
- decoded_double_list_ : MzDataHandler
- decoded_list_ : MzDataHandler
- decoder_ : Base64
- decomp_ : MassDecomposition
- decomposer_ : RealMassDecomposer, MassDecompositionAlgorithm
- decon_ms1_mz_tol_ : SwathQC
- deconvolved_spectrum_ : SpectralDeconvolution
- decoy : SiriusFragmentAnnotation::SiriusTargetDecoySpectra, TransitionTSVFile::TSVTransition, TransitionFlags
- decoy_ : OSWPeptidePrecursor
- decoy_case_sensitive : DecoyHelper::DecoyStatistics
- decoy_compound_ref : MetaboTargetedTargetDecoy::MetaboTargetDecoyMassMapping
- decoy_count : DecoyHelper::DecoyStatistics
- decoy_counts : TargetedExperiment::SummaryStatistics
- decoy_file_number : MetaboTargetedAssay::TargetDecoyGroup
- decoy_index : MetaboTargetedAssay::TargetDecoyGroup
- decoy_index_ : ConfidenceScoring
- decoy_mz : MetaboTargetedAssay::TargetDecoyGroup
- decoy_pattern_ : DBSuitability
- decoy_prefix_ : OpenPepXLAlgorithm, PepXMLFile
- decoy_product_masses : MetaboTargetedTargetDecoy::MetaboTargetDecoyMassMapping
- decoy_rt : MetaboTargetedAssay::TargetDecoyGroup
- decoy_string_ : XQuestResultXMLHandler, OpenPepXLAlgorithm, PeptideIndexing, XFDRAlgorithm
- decoy_type_ : ReactionMonitoringTransition
- decoys_ : PeptideSearchEngineFIAlgorithm, SimpleSearchEngineAlgorithm
- DEF_COSINE_SIMILARITY : GNPSMGFFile
- DEF_MERGE_BIN_SIZE : GNPSMGFFile
- DEF_MSMAP_CACHE : GNPSMGFFile
- DEF_PEPT_CUTOFF : GNPSMGFFile
- default_array_length : MzMLHandler::ChromatogramData, MzMLHandler::SpectrumData
- default_array_length_ : MzMLHandler
- default_baseloss_ : Ribonucleotide
- DEFAULT_BIN_OFFSET_HIRES : BinnedSpectrum
- DEFAULT_BIN_OFFSET_LOWRES : BinnedSpectrum
- DEFAULT_BIN_WIDTH_HIRES : BinnedSpectrum
- DEFAULT_BIN_WIDTH_LOWRES : BinnedSpectrum
- default_dir_ : ToolsDialog, TOPPASToolConfigDialog
- default_ms_level_ : DTAFile
- default_nterm_mods_ : XTandemXMLFile
- default_parameters_file_ : XTandemInfile
- default_processing_ : MzMLHandler
- default_scan_regexp : SpectrumLookup
- default_value : ParameterInformation
- defaultArrayLength : Chromatogram, Spectrum, OSChromatogram, OSSpectrum
- defaults_ : DefaultParamHandler
- deisotope_mode_ : OpenPepXLAlgorithm
- deisotoping_annotate_charge_ : TargetedSpectraExtractor
- deisotoping_fragment_tolerance_ : TargetedSpectraExtractor
- deisotoping_fragment_unit_ : TargetedSpectraExtractor
- deisotoping_keep_only_deisotoped_ : TargetedSpectraExtractor
- deisotoping_max_charge_ : TargetedSpectraExtractor
- deisotoping_max_isopeaks_ : TargetedSpectraExtractor
- deisotoping_min_charge_ : TargetedSpectraExtractor
- deisotoping_min_isopeaks_ : TargetedSpectraExtractor
- deisotoping_use_deisotoper_ : TargetedSpectraExtractor
- delay_ : AcqusHandler
- delay_in_seconds_ : FileWatcher
- delete_buffer_ : LogStream
- delim_ : MSstatsFile, TriqlerFile
- delta_cn_weights_ : SequestOutfile
- delta_mass : MultiplexDeltaMasses::DeltaMass, MultiplexDeltaMassesGenerator::Label, PeptideSearchEngineFIAlgorithm::AnnotatedHit_
- delta_mass_weights_ : SequestOutfile
- delta_masses_ : MultiplexDeltaMasses
- delta_masses_list_ : MultiplexDeltaMassesGenerator
- denominator_ref_ : ConsensusFeature::Ratio
- depth : ACNode::DepthHits
- depth_and_hits : ACNode
- derivatization_agent : MzTabMMetaData
- derivatized_form : MzTabMSmallMoleculeEvidenceSectionRow
- des : SiriusMSFile::CompoundInfo
- desc_ : TOPPASBase
- description : ControlledVocabulary::CVTerm, FASTAFile::FASTAEntry, ParentSequence, IsobaricQuantitationMethod::IsobaricChannelInformation, ItraqConstants::ChannelInfo, MultiplexDeltaMassesGenerator::Label, MzTabMetaData, MzTabMMetaData, MzTabMStudyVariableMetaData, MzTabNucleicAcidSectionRow, MzTabProteinSectionRow, MzTabSampleMetaData, MzTabSmallMoleculeSectionRow, MzTabStudyVariableMetaData, Param::ParamEntry, Param::ParamIterator::TraceInfo, Param::ParamNode, ParameterInformation, OSBinaryDataArray
- description_ : ConsensusFeature::Ratio, FASTAFile, PepXMLFile::AminoAcidModification, ToolInfo
- description_text_ : TOPPASScene
- descriptions_ : ParamXMLHandler
- detecting : TransitionFlags
- detecting_transition : TransitionTSVFile::TSVTransition
- detector : MzTabInstrumentMetaData
- dfs_color_ : TOPPASVertex
- dia_byseries_intensity_min_ : DIAScoring
- dia_byseries_ppm_diff_ : DIAScoring
- dia_centroided_ : DIAScoring
- dia_extract_window_ : DiaPrescore, DIAScoring
- dia_extraction_ppm_ : DIAScoring
- dia_nr_charges_ : DIAScoring
- dia_nr_isotopes_ : DIAScoring
- dia_treewidget_ : DIATreeTab
- dia_widget_ : DataSelectionTabs
- diascoring_ : MRMFeatureFinderScoring
- diatab_controller_ : DataSelectionTabs
- diff_average_mass_ : ResidueModification
- diff_formula_ : UnimodXMLHandler, ResidueModification
- diff_mono_mass_ : ResidueModification
- diff_score : IDDecoyProbability::Transformation_
- digested_db_ : Contaminants
- digested_relevant_peptides_ : NeighborSeq
- digestion_ : IDFilter::DigestionFilter, IDFilter::PeptideDigestionFilter
- digestion_enzyme : DBSearchParam, ProteinIdentification::SearchParameters
- digestion_enzyme_ : FragmentIndex
- dilution_factor : AbsoluteQuantitationStandards::featureConcentration, AbsoluteQuantitationStandards::runConcentration
- DIM : RangeIntensity, RangeMobility, RangeMZ, RangeRT
- dim_ : FeatureXMLHandler
- dimension_name_full_ : MobilityPeak2D, Peak2D
- dimension_name_short_ : MobilityPeak2D, Peak2D
- dimension_unit_full_ : MobilityPeak2D, Peak2D
- dimension_unit_short_ : MobilityPeak2D, Peak2D
- dimensionsize_ : DistanceMatrix< Value >
- dims_ : DimMapper< N_DIM >
- dirName_ : ParamEditorDelegate
- disable : Colorizer::ColorWithUndo_
- disable_parsing_ : FeatureXMLHandler
- disease : MzTabSampleMetaData
- dist_ : HistogramWidget, UniqueIdGenerator
- distance : BinaryTreeNode, QTCluster::Neighbor
- distance_ : MinimumDistance
- distance_it_for_cluster_idx_ : GridBasedClustering< Metric >
- distances_ : GridBasedClustering< Metric >
- distribution_ : IsotopeDistribution
- dlg_ : GUIProgressLoggerImpl
- dm_elements_2d_ : TOPPViewBase
- dm_hull_2d_ : TOPPViewBase
- dm_hulls_2d_ : TOPPViewBase
- dm_ident_2d_ : TOPPViewBase
- dm_label_2d_ : TOPPViewBase
- dm_precursors_2d_ : TOPPViewBase
- dm_unassigned_2d_ : TOPPViewBase
- do_p_trim : IsoSpecTotalProbWrapper
- document_id_ : IdXMLFile
- docurl_ : ToolInfo
- doi : Citation
- dotprod_score_dia : OpenSwath_Scores
- doWrite_ : OpenSwathOSWWriter
- dps_ : MSDataWritingConsumer
- drag_start_pos_ : TOPPASTreeView
- draw_group_1d_ : TOPPViewBase
- draw_interesting_MZs_ : Plot1DCanvas
- draw_modes_ : Plot1DCanvas
- drift_time : Biosaur2Algorithm::PeptideFeature, TransitionTSVFile::TSVTransition, LightCompound
- drift_time_ : MSSpectrum, Precursor, PeptideCompound
- drift_time_exists : TransitionPQPFile::PQPSqlQueryInfo
- drift_time_median : Biosaur2Algorithm::Hill
- drift_time_unit_ : Mobilogram, MSSpectrum, Precursor
- drift_times : Biosaur2Algorithm::Hill
- drift_window_low_ : Precursor
- drift_window_up_ : Precursor
- DRIFTTIME_NOT_SET : IMTypes
- dry_run_ : TOPPASScene
- dt_ : DateTime
- dw_ : AcqusHandler
1.9.8 