MzTabPSMSectionRow Struct Reference

PSM - PSM section (Table based) More...

#include <OpenMS/FORMAT/MzTab.h>

Classes
struct	RowCompare
	Comparison operator for sorting rows. More...

Public Attributes
MzTabString	sequence
	The peptide’s sequence. More...
MzTabInteger	PSM_ID
MzTabString	accession
	The protein’s accession. More...
MzTabBoolean	unique
	0=false, 1=true, null else: Peptide is unique for the protein. More...
MzTabString	database
	Name of the sequence database. More...
MzTabString	database_version
	Version (and optionally # of entries). More...
MzTabParameterList	search_engine
	Search engine(s) that identified the peptide. More...
std::map< Size, MzTabDouble >	search_engine_score
	Search engine(s) score(s) for the peptide. More...
MzTabInteger	reliability
	(1-3) 0=null Identification reliability for the peptide. More...
MzTabModificationList	modifications
	Modifications identified in the peptide. More...
MzTabDoubleList	retention_time
	Time points in seconds. Semantics may vary. More...
MzTabInteger	charge
	The charge of the experimental precursor ion. More...
MzTabDouble	exp_mass_to_charge
	The m/z ratio of the experimental precursor ion. More...
MzTabDouble	calc_mass_to_charge
MzTabString	uri
	Location of the PSM’s source entry. More...
MzTabSpectraRef	spectra_ref
	Spectra identifying the peptide. More...
MzTabString	pre
MzTabString	post
MzTabString	start
MzTabString	end
std::vector< MzTabOptionalColumnEntry >	opt_
	Optional columns must start with “opt_”. More...

Detailed Description

PSM - PSM section (Table based)

Member Data Documentation

accession

MzTabString accession

The protein’s accession.

Referenced by MzTabPSMSectionRow::RowCompare::operator()().

calc_mass_to_charge

MzTabDouble calc_mass_to_charge

charge

MzTabInteger charge

The charge of the experimental precursor ion.

database

MzTabString database

Name of the sequence database.

database_version

MzTabString database_version

Version (and optionally # of entries).

end

MzTabString end

exp_mass_to_charge

MzTabDouble exp_mass_to_charge

The m/z ratio of the experimental precursor ion.

modifications

MzTabModificationList modifications

Modifications identified in the peptide.

opt_

std::vector<MzTabOptionalColumnEntry> opt_

Optional columns must start with “opt_”.

post

MzTabString post

pre

MzTabString pre

PSM_ID

MzTabInteger PSM_ID

reliability

MzTabInteger reliability

(1-3) 0=null Identification reliability for the peptide.

retention_time

MzTabDoubleList retention_time

Time points in seconds. Semantics may vary.

search_engine

MzTabParameterList search_engine

Search engine(s) that identified the peptide.

search_engine_score

std::map<Size, MzTabDouble> search_engine_score

Search engine(s) score(s) for the peptide.

sequence

MzTabString sequence

The peptide’s sequence.

Referenced by MzTabPSMSectionRow::RowCompare::operator()().

spectra_ref

MzTabSpectraRef spectra_ref

Spectra identifying the peptide.

Referenced by MzTabPSMSectionRow::RowCompare::operator()().

start

MzTabString start

unique

MzTabBoolean unique

0=false, 1=true, null else: Peptide is unique for the protein.

uri

MzTabString uri

Location of the PSM’s source entry.