Here is a list of all class members with links to the classes they belong to:
- f -
- f
: Base64::Reinterpreter32_
, Base64::Reinterpreter64_
, IsotopeWavelet::fi_
- f_
: FASTAContainer< TFI_File >
- f_cf_ids_
: MzQuantMLHandler
- f_f_obj_
: MzQuantMLHandler
- F_HULL
: LayerData
- F_HULLS
: LayerData
- f_max_
: PrecursorIonSelectionPreprocessing
- f_observed_Mass
: LCElutionPeak
- F_UNASSIGNED
: LayerData
- FA
: IonSource
- FAB
: IonSource
- factor_
: ParentPeakMower
, SpectrumCheapDPCorr
- Factory()
: Factory< FactoryProduct >
- FactoryType
: Factory< FactoryProduct >
- FailedAPICall()
: FailedAPICall
- FAIMS_COMPENSATION_VOLTAGE
: Precursor
- false_discovery_rate
: MzTabMetaData
- FalseDiscoveryRate()
: FalseDiscoveryRate
- fapex_intensity
: LCElutionPeak
- far_
: Spectrum3DOpenGLCanvas
- FARADAYCUP
: IonDetector
- FASTA
: FileTypes
- fasta_entry
: ProteinResolver::ProteinEntry
- FASTAContainer()
: FASTAContainer< TFI_File >
, FASTAContainer< TFI_Vector >
- FASTAEntry()
: FASTAFile::FASTAEntry
- FASTAFile()
: FASTAFile
- fatal_streams_
: LogConfigHandler
- fatalError()
: XMLHandler
, XMLValidator
- fCentroidPeaks
: CentroidData
- fCharge
: LCElutionPeak
- FD
: IonSource
- fDeconvPeaks
: Deisotoper
- fdr_xprophet_()
: XFDRAlgorithm
- FEASIBLE
: LPWrapper
- feat_finder_
: FeatureFinderIdentificationAlgorithm
- feat_score_
: FeatureHypothesis
- feature
: AbsoluteQuantitationStandards::featureConcentration
- Feature()
: Feature
- feature()
: KDTreeFeatureMaps
, PSLPFormulation::IndexTriple
, QTCluster::Element
, QTCluster::Neighbor
- feature0_charge_
: ChargePair
- feature0_index_
: ChargePair
- feature1_charge_
: ChargePair
- feature1_index_
: ChargePair
- feature_
: FeatureEditDialog
, FeatureOpenMS
, GridFeature
- feature_compare_
: FeatureFinderIdentificationAlgorithm
- feature_distance_
: FeatureGroupingAlgorithmKD
, QTClusterFinder
- feature_filter_peptides_
: FeatureFinderIdentificationAlgorithm
- feature_filter_quality_
: FeatureFinderIdentificationAlgorithm
- FEATURE_GROUPING
: DataProcessing
- feature_id
: CsiFingerIdMzTabWriter::CsiAdapterIdentification
- feature_ID
: SHFeature
- feature_id
: SiriusMzTabWriter::SiriusAdapterIdentification
- FEATURE_ID_MULTIPLE_DIVERGENT
: BaseFeature
- FEATURE_ID_MULTIPLE_SAME
: BaseFeature
- FEATURE_ID_NONE
: BaseFeature
- FEATURE_ID_SINGLE
: BaseFeature
- feature_index_
: GridFeature
- feature_list
: LCMS
- feature_map_
: FeatureFinderMultiplexAlgorithm
, MRMFeature
- feature_maps_
: MSQuantifications::Assay
, MSQuantifications
, MSSim
- feature_match_status
: SHFeature
- feature_max
: SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- feature_min
: SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- feature_name_
: AbsoluteQuantitationMethod
- feature_only_
: SiriusAdapterAlgorithm
- FeatureDeconvolution()
: FeatureDeconvolution
- FeatureDistance()
: FeatureDistance
- FeatureEditDialog()
: FeatureEditDialog
- featureExtraInformation
: SHFeature
- FeatureFileOptions()
: FeatureFileOptions
- FeatureFinder()
: FeatureFinder
- FeatureFinderAlgorithm()
: FeatureFinderAlgorithm
- FeatureFinderAlgorithmIsotopeWavelet()
: FeatureFinderAlgorithmIsotopeWavelet
- FeatureFinderAlgorithmMRM()
: FeatureFinderAlgorithmMRM
- FeatureFinderAlgorithmPicked()
: FeatureFinderAlgorithmPicked
- FeatureFinderAlgorithmSH()
: FeatureFinderAlgorithmSH
- FeatureFinderAlgorithmSHCtrl()
: FeatureFinderAlgorithmSHCtrl
, SuperHirnParameters
- FeatureFinderIdentificationAlgorithm()
: FeatureFinderIdentificationAlgorithm
- FeatureFinderMultiplexAlgorithm()
: FeatureFinderMultiplexAlgorithm
- FeatureFindingMetabo()
: FeatureFindingMetabo
- FeatureGroupingAlgorithm()
: FeatureGroupingAlgorithm
- FeatureGroupingAlgorithmKD()
: FeatureGroupingAlgorithmKD
- FeatureGroupingAlgorithmLabeled()
: FeatureGroupingAlgorithmLabeled
- FeatureGroupingAlgorithmQT()
: FeatureGroupingAlgorithmQT
- FeatureGroupingAlgorithmUnlabeled()
: FeatureGroupingAlgorithmUnlabeled
- FeatureHandle()
: FeatureHandle
- FeatureHandleMutable_()
: FeatureHandle::FeatureHandleMutable_
- FeatureHypothesis()
: FeatureHypothesis
- FeatureIterator_
: LayerStatisticsDialog
- FeatureKDTree
: KDTreeFeatureMaps
- FeatureLCProfile()
: FeatureLCProfile
- FeatureListType
: MRMFeature
- FeatureMap()
: FeatureMap
- FeatureMapSharedPtrType
: LayerData
, SpectrumCanvas
, TOPPViewBase
, TOPPViewIdentificationViewBehavior
, TOPPViewSpectraViewBehavior
- FeatureMapType
: FeatureDeconvolution
, LayerData
, MetaboliteFeatureDeconvolution
, SpectrumCanvas
, SpectrumWidget
, TOPPViewBase
, TOPPViewIdentificationViewBehavior
, TOPPViewSpectraViewBehavior
- FeatureOpenMS()
: FeatureOpenMS
- features
: LayerData
, MSstatsFile::AggregatedConsensusInfo
- features_
: FeatureFinderAlgorithm
, KDTreeFeatureMaps
, MRMFeature
, MRMFeatureOpenMS
- FeatureType
: FeatureDeconvolution
, FeatureMap
, MetaboliteFeatureDeconvolution
, SpectrumCanvas
, MRMScoring
- FeatureType_
: ILPDCWrapper
- FEATUREXML
: FileTypes
- FeatureXMLFile()
: FeatureXMLFile
, IdXMLFile
- fEndTR
: LCElutionPeak
- fetchSpectrumSwath()
: OpenSwathScoring
- ff_
: FeatureFinderAlgorithm
- FI
: IonSource
- FIAMSDataProcessor()
: FIAMSDataProcessor
- FIAMSScheduler()
: FIAMSScheduler
- FIB
: IonSource
- fid
: SiriusMSFile::CompoundInfo
- FidHandler()
: FidHandler
- field
: DataFilters::DataFilter
- field_changed_()
: DataFilterDialog
- FII
: IonSource
- FILE
: StreamHandler
- file_
: Bzip2Ifstream
, BaseException
, GlobalExceptionHandler
, HDF5Connector
, XMLHandler
- file_current_index_
: Bzip2InputStream
, GzipInputStream
- file_format_filter_
: InputFile
- file_name_
: ListEditorDelegate
, TOPPASResource
, TOPPASScene
- file_origin_to_idx_
: IDMergerAlgorithm
- file_path_
: DocumentIdentifier
, DocumentIdentifierVisualizer
- file_size_
: SourceFile
, SourceFileVisualizer
- file_stream_
: CSVWriter
- file_type_
: DocumentIdentifier
, DocumentIdentifierVisualizer
, SourceFile
, SourceFileVisualizer
- fileChanged()
: FileWatcher
- fileChanged_()
: TOPPViewBase
- FileEmpty()
: FileEmpty
- fileList()
: File
- filename
: ConsensusMap::ColumnHeader
, LayerData
- filename_
: CachedmzML
, FIAMSScheduler
, INIFileEditorWindow
, IndexedMzMLHandler
, MzMLSqliteHandler
, MzMLSqliteSwathHandler
- fileName_
: ParamEditorDelegate
- filename_
: MSDataSqlConsumer
, MzTab::CMMzTabStream
, MzTab::IDMzTabStream
, OnDiscMSExperiment
, ToolsDialog
, TOPPASToolConfigDialog
, XMLValidator
- filename_cached_
: CachedmzML
- filenames
: TOPPASVertex::VertexRoundPackage
- filenames_
: File::TemporaryFiles_
, TOPPASVertex::TOPPASFilenames
- fileNamesValid()
: TOPPASInputFileListVertex
- FileNameTooLong()
: FileNameTooLong
- FileNotFound()
: FileNotFound
- FileNotReadable()
: FileNotReadable
- FileNotWritable()
: FileNotWritable
- fileOpen()
: QApplicationTOPP
- fileParamValidityCheck_()
: TOPPBase
- files_total_
: TOPPASOutputFileListVertex
- files_written_
: TOPPASOutputFileListVertex
- filestream_
: IndexedMzMLHandler
- FileWatcher()
: FileWatcher
- fill_data_
: PeakFileOptions
- fillCalibrants()
: InternalCalibration
- fillChromatogramData_()
: MzMLHandler
- fillComboBox_()
: BaseVisualizerGUI
- fillComboBoxes_()
: TOPPASIOMappingDialog
- fillData_()
: MzDataHandler
- fillDensities()
: PosteriorErrorProbabilityModel
- filled_
: IDMergerAlgorithm
- fillExtendedResidueTable_()
: IntegerMassDecomposer< ValueType, DecompositionValueType >
- fillFromInputLine()
: FuzzyStringComparator::StreamElement_
- fillGaps_()
: CoarseIsotopePatternGenerator
- fillID_()
: InternalCalibration
- fillIDs_()
: InternalCalibration
- fillIndistinguishableGroupsWithSingletons()
: ProteinIdentification
- fillInputVector_()
: IsobaricIsotopeCorrector
- fillIntensities()
: BaseModel< D >
- fillIntensity()
: BaseModel< D >
- fillLabelMasterList_()
: MultiplexDeltaMassesGenerator
- fillLeft()
: String
, StringUtils
- fillLogDensities()
: PosteriorErrorProbabilityModel
- fillLogDensitiesGumbel()
: PosteriorErrorProbabilityModel
- fillRight()
: String
, StringUtils
- fillVectorsOfMessagePassers()
: MessagePasserFactory< Label >
- filter()
: GaussFilter
, GaussFilterAlgorithm
, MorphologicalFilter
, MultiplexFilteringCentroided
, MultiplexFilteringProfile
, SavitzkyGolayFilter
- filter_
: DataFilterDialog
- filter_by_num_masstraces_
: SiriusAdapterAlgorithm
- filter_dock_widget_
: TOPPViewBase
- filter_list_
: TOPPViewBase
- filter_passed
: PeptideIndexing::FoundProteinFunctor
- filter_rejected
: PeptideIndexing::FoundProteinFunctor
- filter_threshold_
: PeptideIdentificationVisualizer
, ProteinIdentificationVisualizer
- filterAveragineModel_()
: MultiplexFiltering
, MultiplexFilteringProfile
- filterByMissedCleavages()
: EnzymaticDigestion
- filterByPeakWidth()
: ElutionPeakDetection
- filterCCs_()
: MapAlignmentAlgorithmKD
- filterChanged()
: FilterList
- filterDecomps_()
: CompNovoIdentificationBase
- filterDeisotopicMSPeak()
: ProcessData
- filterDetectability()
: DetectabilitySimulation
- filterEdit_()
: FilterList
- filterExperiment()
: GaussFilter
, MorphologicalFilter
, SavitzkyGolayFilter
- FilterFeatureMap()
: MRMFeatureFilter
- FilterFeatureMapBackgroundInterference()
: MRMFeatureFilter
- FilterFeatureMapPercRSD()
: MRMFeatureFilter
- filterFeatures_()
: FeatureFinderIdentificationAlgorithm
- filterFeaturesFinalizeAssay_()
: FeatureFinderIdentificationAlgorithm
- FilterFunctor()
: FilterFunctor
- filterGroupsByScore()
: IDFilter
- filterHits_()
: MetaDataBrowser
- filterHitsByRank()
: IDFilter
- filterHitsByScore()
: IDFilter
- FILTERING
: DataProcessing
- FilterList()
: FilterList
- FilterOperation
: DataFilters
- filterPeakMap()
: BernNorm
, MarkerMower
, NLargest
, Normalizer
, ParentPeakMower
, Scaler
, SqrtMower
, ThresholdMower
, WindowMower
- filterPeakPositions_()
: MultiplexFiltering
- filterPeakSpectrum()
: BernNorm
, MarkerMower
, NLargest
, Normalizer
, ParentPeakMower
, Scaler
, SqrtMower
, ThresholdMower
, WindowMower
- filterPeakSpectrumForTopNInJumpingWindow()
: WindowMower
- filterPeakSpectrumForTopNInSlidingWindow()
: WindowMower
- filterPeptideCorrelation_()
: MultiplexFiltering
, MultiplexFilteringProfile
- filterPeptideEvidences()
: IDFilter::DigestionFilter
, IDFilter
- FilterPeptideEvidences()
: IDFilter
- filterPeptideIds_()
: PrecursorIonSelection
- filterPeptidesByCharge()
: IDFilter
- filterPeptidesByLength()
: IDFilter
- filterPeptidesByMZ()
: IDFilter
- filterPeptidesByMZError()
: IDFilter
- filterPeptidesByRT()
: IDFilter
- filterPeptidesByRTPredictPValue()
: IDFilter
- filterPeptideSequences()
: IDFilter::PeptideDigestionFilter
- filterPermuts_()
: CompNovoIdentificationBase
- filterPrecursorsByTags()
: OPXLHelper
- filterProtIds_()
: PrecursorIonSelection
- filterQueryMatchesByScore()
: IDFilter
- filterRange()
: MorphologicalFilter
- filters
: LayerData
- filters_
: DataFilters
, FilterList
- filterSpectrum()
: BernNorm
, MarkerMower
, NLargest
, Normalizer
, ParentPeakMower
, Scaler
, SqrtMower
, ThresholdMower
- filterTaxonomyIdentifier_()
: PrecursorIonSelectionPreprocessing
- FilterType
: DataFilters
- final_MS_
: MassAnalyzerVisualizer
- final_MS_exponent_
: MassAnalyzer
- final_score
: ConsensusIDAlgorithm::HitInfo
- finalizeCluster()
: QTCluster
- finalized_
: QTCluster
- find()
: KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
, File
- find_AC()
: MS2Info
- find_closest_mz_match()
: ProcessData
- find_exact()
: KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- find_feature_by_ID()
: LCMS
- find_LC_MS_by_ID()
: LCMS
- find_match_by_id()
: SHFeature
- find_Modification()
: MS2Info
- find_nearest()
: KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- find_nearest_if()
: KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- find_retention_time()
: ProcessData
- find_true_peak()
: LCElutionPeak
- find_within_range()
: KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- findBestIsotopeFit_()
: FeatureFinderAlgorithmPicked
- findByIndex()
: SpectrumLookup
- findByNativeID()
: SpectrumLookup
- findByReference()
: SpectrumLookup
- findByRegExpMatch_()
: SpectrumLookup
- findByRT()
: SpectrumLookup
- findByScanNumber()
: SpectrumLookup
- findClosestPeak_()
: PeakPickerMRM
- findCommonMetaKeys()
: MetaInfoInterfaceUtils
- findComponentFeature_()
: AbsoluteQuantitationStandards
- findConnectedComponent()
: PeptideProteinResolution
- findDatabase()
: File
- findDecoyString()
: DecoyHelper
- findDoc()
: File
- findEntry()
: Param::ParamNode
- findEntry_()
: TOPPBase
- findEntryRecursive()
: Param::ParamNode
- finder_
: AhoCorasickAmbiguous
- findExecutable()
: File
- findFeaturesToMerge()
: MS1FeatureMerger
- findFirst()
: Param
- findFixedAndTermResidues_()
: MRMDecoy
- findFixedResidues()
: MRMDecoy
- findFixedResidues_()
: MRMDecoy
- findHighestInWindow()
: MSSpectrum
- findHit()
: ProteinIdentification
- findIndexListOffset()
: IndexedMzMLDecoder
- findIsotope_()
: FeatureFinderAlgorithmPicked
- findLargestPeak()
: MRMTransitionGroupPicker
- findLocalExtrema()
: ElutionPeakDetection
- findLocalFeatures_()
: FeatureFindingMetabo
- findMatches()
: ModificationDefinitionsSet
- findMatchingPeaks_()
: TwoDOptimization
- findMaxByIntPeak()
: MassTrace
- findMaxima()
: PeakPickerMaxima
- findMinimalProteinList()
: PSProteinInference
- findModificationIndex()
: ModificationsDB
- findMS2Fragment()
: MS2ConsensusSpectrum
- findMzKey()
: BackgroundControl
- findNearest()
: MSChromatogram
, MSSpectrum
, MZTrafoModel
- findNearestNeighbour_()
: GridBasedClustering< Metric >
- findNearestPeak_()
: Spectrum2DCanvas
- findNext()
: AhoCorasickAmbiguous
, Param
- findNode()
: Param::ParamNode
- findParentOf()
: Param::ParamNode
- findPeakAtPosition_()
: Spectrum1DCanvas
- findPeptide()
: TransitionHelper
- findPeptideEntry_()
: ProteinResolver
- findPosAtPeakHeightPercent_()
: PeakIntegrator
- findPythonScript_()
: SwathTabWidget
- findR()
: RWrapper
- findReferenceChannel_()
: IsobaricNormalizer
- findRelevantFilePaths_()
: QuantitativeExperimentalDesign
- findScoreType()
: IdentificationData
, IDScoreSwitcherAlgorithm
- findScript()
: RWrapper
- findSearchParameters_()
: MzIdentMLDOMHandler
- findSiblingTOPPExecutable()
: File
- findStream_()
: LogStream
- findTopUniqueHits_()
: XFDRAlgorithm
- findTrKey()
: BackgroundControl
- findWidestPeakIndices()
: MRMTransitionGroupPicker
- findWinner_()
: PeakIntensityPredictor
- FineIsotopePatternGenerator()
: FineIsotopePatternGenerator
- finishAdding_()
: BaseVisualizerGUI
, Spectrum1DCanvas
, Spectrum2DCanvas
, Spectrum3DCanvas
, SpectrumCanvas
- finishContextMenu_()
: Spectrum2DCanvas
- finished_
: TOPPASVertex
- finishHoveringEdge()
: TOPPASScene
, TOPPASVertex
- finishTOPPToolExecution()
: TOPPViewBase
- first
: ProbablePhosphoSites
, TransformationModel::DataPoint
- first_
: AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
- first_column_
: FuzzyStringComparator
- first_name_
: ContactPerson
- first_run_inference_
: MzTab::CMMzTabStream
, MzTab::IDMzTabStream
- FIRST_STABILITY_REGION
: Instrument
- firstExec()
: TOPPASIOMappingDialog
- firstname_
: ContactPersonVisualizer
- firstToUpper()
: String
, StringUtils
- fIsotopMass
: LCElutionPeak
- fit()
: EGHTraceFitter
, GaussTraceFitter
, GammaDistributionFitter
, GaussFitter
, GumbelDistributionFitter
, PosteriorErrorProbabilityModel
, TraceFitter
- fit1d()
: BiGaussFitter1D
, EGHFitter1D
, EmgFitter1D
, ExtendedIsotopeFitter1D
, Fitter1D
, GaussFitter1D
, IsotopeFitter1D
- fit_data_
: MapAlignmentAlgorithmKD
- fit_EMG_
: PeakIntegrator
- fitAndValidateModel_()
: ElutionModelFitter
- fitCalibration()
: AbsoluteQuantitation
- fitElutionModels()
: ElutionModelFitter
- fitEMGPeakModel()
: EmgGradientDescent
- fitGumbelGauss()
: PosteriorErrorProbabilityModel
- fitLOWESS()
: MapAlignmentAlgorithmKD
- fitModel()
: TransformationDescription
- fitOffset_()
: MaxLikeliFitter1D
- fitPeakShape_()
: PeakPickerCWT
- fitRT_()
: EmgScoring
, FeatureFinderAlgorithmMRM
- fittedIntensity_
: CentroidPeak
- Fitter1D()
: Fitter1D
- fitter_emg1D_
: EmgScoring
- fitWeighted()
: GumbelDistributionFitter
, GumbelMaxLikelihoodFitter
- FIVE_PRIME
: Ribonucleotide
- five_prime_
: NASequence
- five_prime_gain_
: DigestionEnzymeRNA
, RNaseDigestion
- FivePrime
: NASequence
- FIXED
: LPWrapper
- fixed_mod
: MzIdentMLDOMHandler::ModificationParam
, MzTabMetaData
- fixed_modification_
: ModificationDefinition
- fixed_modifications
: ProteinIdentification::SearchParameters
- fixed_modifications_
: PepXMLFile
, PepXMLFileMascot
, PrecursorIonSelectionPreprocessing
- fixed_mods
: DBSearchParam
- fixed_mods_
: ModificationDefinitionsSet
, MzTab::CMMzTabStream
, MzTab::IDMzTabStream
, PrecursorIonSelectionPreprocessing
- fixedModNames_
: OpenPepXLAlgorithm
, OpenPepXLLFAlgorithm
- fixRange()
: Spectrum1DGoToDialog
, Spectrum2DGoToDialog
- Flag
: FeatureFinderDefs
- flag
: MapAlignmentAlgorithmSpectrumAlignment::Compare
- FLAG
: ParameterInformation
- flag
: QcMLFile::QualityParameter
- flag_or_filter_
: MRMFeatureFilter
- flags
: LayerData
- Flags
: LayerData
- flags_
: Annotation1DTextItem
, FeatureFinder
- flipLayer()
: Spectrum1DCanvas
- flipped
: LayerData
- flipped_y_axis_
: Spectrum1DWidget
- flippedLayersExist()
: Spectrum1DCanvas
- FLOAT
: ListEditor
- float_data_arrays_
: MSChromatogram
, MSSpectrum
, ProteinIdentification::ProteinGroup
- FloatDataArray
: MSChromatogram
, MSSpectrum
, ProteinIdentification::ProteinGroup
- FloatDataArrays
: FeatureFinderAlgorithmMRM
, FeatureFinderAlgorithmPicked
, MSChromatogram
, MSSpectrum
, ProteinIdentification::ProteinGroup
- floatfield()
: BK_PrecPolicy< T >
- FLOATINDICES
: PeakPickerMRM
- floats_32
: MzMLHandlerHelper::BinaryData
- floats_64
: MzMLHandlerHelper::BinaryData
- FLOWINJECTIONANALYSIS
: IonSource
- flush()
: IChromatogramsWriter
, ISpectraWriter
, LogStream
, MSDataSqlConsumer
- flush_after_
: MSDataSqlConsumer
- flux_
: HPLC
- fMinPeakGroupSize
: Deisotoper
- fMonoMass
: LCElutionPeak
- fmz
: SiriusMSFile::CompoundInfo
- fNoise
: CentroidData
- fNrIsotopes
: LCElutionPeak
- FOCALPLANEARRAY
: IonDetector
- FOCALPLANECOLLECTOR
: IonDetector
- focusByTab()
: TOPPASBase
- focusInEvent()
: OpenMSLineEdit
- focusOutEvent()
: OpenMSLineEdit
, Spectrum3DOpenGLCanvas
, SpectrumCanvas
- followRedirect()
: MascotRemoteQuery
- followUpScan
: IsobaricChannelExtractor::PuritySate_
- followUpValid()
: IsobaricChannelExtractor::PuritySate_
- force_constraints_
: FeatureDistance
- force_default_mods_
: XTandemInfile
- force_invalid_mods_
: TransitionTSVFile
- force_maxquant_compatibility_
: PeakFileOptions
- force_tpp_compatibility_
: PeakFileOptions
- form_version_
: MascotInfile
- format
: MzTabMSRunMetaData
- format_
: SaveImageDialog
- FORMAT_CONVERSION
: DataProcessing
- FORMAT_GLPK
: LPWrapper
- FORMAT_LP
: LPWrapper
- FORMAT_MPS
: LPWrapper
- formula
: AccurateMassSearchEngine::MappingEntry_
, IdentifiedCompound
, SiriusMSFile::CompoundInfo
, SiriusMzTabWriter::SiriusAdapterHit
- formula_
: Adduct
, EmpiricalFormula
, Residue
, ResidueModification
, Ribonucleotide
- forward_
: HiddenMarkovModel
- forwardDump()
: HiddenMarkovModel
- forwardTOPPOutput()
: TOPPASToolVertex
- found_adduct_
: AccurateMassSearchResult
- found_precursor_charge_
: SpectralMatch
- found_precursor_mass_
: SpectralMatch
- FoundProteinFunctor()
: PeptideIndexing::FoundProteinFunctor
- FOURIERTRANSFORM
: MassAnalyzer
- FOURPLEX
: ItraqConstants
- fpeak_area
: LCElutionPeak
- fPeakGroupStart
: CentroidData
- fraction
: ExperimentalDesign::MSFileSectionEntry
- fraction_
: MSstatsFile::MSstatsLine_
, MSstatsFile::MSstatsTMTLine_
- fraction_counter_
: PrecursorIonSelection
- fraction_group
: ExperimentalDesign::MSFileSectionEntry
- fraction_identifier_
: ExperimentalSettings
, ExperimentalSettingsVisualizer
- frag_annotations
: OPXLDataStructs::CrossLinkSpectrumMatch
- frag_charge_
: MSstatsFile::MSstatsLine_
- fragment_annotations
: SimpleSearchEngineAlgorithm::AnnotatedHit_
- fragment_annotations_
: PeptideHit
- fragment_charge
: TransitionTSVFile::TSVTransition
, LightTransition
- fragment_ion_
: MSstatsFile::MSstatsLine_
- fragment_ion_codes_
: NucleicAcidSearchEngine
- fragment_lower_mz_
: XTandemInfile
- fragment_mass_error_unit_
: XTandemInfile
- fragment_mass_tolerance
: DBSearchParam
, ProteinIdentification::SearchParameters
- fragment_mass_tolerance_
: AScore
, CompNovoIdentificationBase
, CompNovoIonScoringBase
, OpenPepXLAlgorithm
, OpenPepXLLFAlgorithm
, SimpleSearchEngineAlgorithm
, XTandemInfile
- fragment_mass_tolerance_ppm
: ProteinIdentification::SearchParameters
- fragment_mass_tolerance_unit_
: SimpleSearchEngineAlgorithm
- fragment_mass_tolerance_unit_ppm_
: OpenPepXLAlgorithm
, OpenPepXLLFAlgorithm
- fragment_mass_tolerance_xlinks_
: OpenPepXLAlgorithm
, OpenPepXLLFAlgorithm
- fragment_mass_type_
: XTandemInfile
- fragment_modification
: TransitionTSVFile::TSVTransition
- fragment_mz_error_
: MetaboliteSpectralMatching
- fragment_mzdelta
: TransitionTSVFile::TSVTransition
- fragment_nr
: TransitionTSVFile::TSVTransition
- fragment_tolerance
: MzIdentMLDOMHandler::SpectrumIdentificationProtocol
- fragment_tolerance_ppm
: DBSearchParam
- fragment_tolerance_ppm_
: AScore
- fragment_type
: TransitionTSVFile::TSVTransition
- fragment_window_
: SpectraIdentificationViewWidget
- FragmentAnnotationDetail_()
: RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_
- fragmentAnnotationDetailsToPHFA()
: RNPxlFragmentAnnotationHelper
- fragmentation_method
: MzTabMSRunMetaData
- FragmentationType
: ProtonDistributionModel
- fragmenterror_statistics_
: SpectrumAnnotator
- FragmentMassError()
: FragmentMassError
- fragmentMZ
: MS2Fragment
- FragmentSeqMap
: MRMAssay
- frame_size_
: SavitzkyGolayFilter
- freq_
: IonDetectorVisualizer
- FRINGING_FIELD
: Instrument
- from_
: TOPPASEdge
- from_max_to_left_
: IsotopeWaveletTransform< PeakType >
- from_max_to_right_
: IsotopeWaveletTransform< PeakType >
- fromCellString()
: MzTabBoolean
, MzTabDouble
, MzTabDoubleList
, MzTabInteger
, MzTabIntegerList
, MzTabModification
, MzTabModificationList
, MzTabParameter
, MzTabParameterList
, MzTabSpectraRef
, MzTabString
, MzTabStringList
- fromConsensusMap()
: ExperimentalDesign
- fromFeatureMap()
: ExperimentalDesign
- fromIdentifications()
: ExperimentalDesign
- fromLocalFile()
: TOPPASResource
- fromNative_()
: StringManager
- fromQStringList()
: StringListUtils
- fromString()
: AASequence
, DataFilters::DataFilter
, MultiGradient
, NASequence
- front()
: ConstRefVector< ContainerT >
- front_boxes_
: IsotopeWaveletTransform< PeakType >
- fRT
: LCElutionPeak
- fScanNumber
: Deisotoper
- fScanNumberApex
: LCElutionPeak
- fScanNumberEnd
: LCElutionPeak
- fScanNumberStart
: LCElutionPeak
- fScanRetentionTime
: CentroidData
- fShortReportFlag
: Deisotoper
- fSignalToNoise
: LCElutionPeak
- fSNIntensityThreshold
: LCElutionPeak
- fStartTR
: LCElutionPeak
- fTheta
: Deisotoper
- FTPeakDetectController()
: FTPeakDetectController
- fulfilled_
: SemanticValidator
- Full
: NASequence
, Residue
- full_id_
: ResidueModification
- full_meta_
: MSDataSqlConsumer
- full_name
: MzTabCVMetaData
- full_name_
: ResidueModification
- FULL_SQ
: MS2Info
- fullDimensionName()
: Peak2D
- fullDimensionNameMZ()
: Peak2D
- fullDimensionNameRT()
: Peak2D
- fullDimensionUnit()
: Peak2D
- fullDimensionUnitMZ()
: Peak2D
- fullDimensionUnitRT()
: Peak2D
- fullname
: CV
- FullPeptideName
: TransitionTSVFile::TSVTransition
- FullSwathFileConsumer()
: FullSwathFileConsumer
- function_
: BaseException
, GlobalExceptionHandler
- FunctionType
: Factory< FactoryProduct >
- Functor()
: GumbelMaxLikelihoodFitter::Functor< _Scalar, NX, NY >
- FuzzyACPattern
: AhoCorasickAmbiguous
- FuzzyStringComparator()
: FuzzyStringComparator
- fVolume
: LCElutionPeak
- FWHM()
: FWHM
, MassAnalyzer
- fwhm_
: MassTrace
- fwhm_bound_
: PeakPickerCWT
- fwhm_end_idx_
: MassTrace
- fwhm_mz_avg
: MassTrace
- fwhm_start_idx_
: MassTrace
- fwhm_threshold_
: TargetedSpectraExtractor
- fwhm_weight_
: TargetedSpectraExtractor
- fWindowWidth
: CentroidData